# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	11.52		
2p8tA	200	14.40		
2nsfA	261	18.81		
1v9wA	130	19.15	c.47.1.16	108453
1ygsA	234	22.78	b.26.1.1	23907
2a6hA	315	25.95	d.74.3.1,d.181.1.1	126260,126261
2pwwA	127	26.76		
2nlwA	105	27.03		
1b0aA	288	29.48	c.2.1.7,c.58.1.2	30286,33934
2o6pA	161	29.48		
2p8iA	117	29.67	d.58.55.1	139522
1y6hA	177	31.84	d.167.1.1	116505
2a8aA	439	34.61		
2aefA	234	34.63		
1nm1G	125	37.38	d.109.1.1	80653
1pa7A	130	37.47	a.40.1.1	94410
1x65A	89	38.34		
2ok8A	316	38.86		
1yjmA	110	39.60	b.26.1.2	123427
1xfuA	747	39.98		
1doiA	128	40.30	d.15.4.1	37676
1xhvA	257	43.27	c.52.1.19	109597
2qkhA	135	45.42		
1gudA	288	45.99	c.93.1.1	83326
2audA	257	46.76		
1xfxA	777	46.80		
1bfd	528	46.86		
2hsiA	282	46.89		
2ns6A	185	48.20		
2gigA	257	48.45		
1x0cA	549	51.94		
1t6aA	126	52.26	d.129.8.1	106555
2r5xA	129	53.94		
2eqaA	352	58.42		
1fdrA	248	59.91	b.43.4.2,c.25.1.1	25653,31543
1hz6A	72	62.97	d.15.7.1	61429
2hsjA	214	66.71		
1pm3A	78	68.52	b.41.1.2	94889
1gpr	162	71.01		
2jodA	106	74.66		
1bdfA	235	74.74	d.74.3.1,d.181.1.1	39727,42602
1es6A	296	76.28	b.31.1.1,b.31.1.1	83048,83049
2a5sA	284	86.71	c.94.1.1	126178
1aipA	405	86.73	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1offA	97	86.87	d.15.4.1	86947
1krhA	338	89.50	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893