# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	11.32		
2p8tA	200	15.54		
1b0aA	288	17.92	c.2.1.7,c.58.1.2	30286,33934
2a6hA	315	17.95	d.74.3.1,d.181.1.1	126260,126261
2pwwA	127	18.23		
2nsfA	261	21.95		
1xfuA	747	22.03		
1y6hA	177	22.21	d.167.1.1	116505
2eqaA	352	23.80		
2o6pA	161	25.37		
2aefA	234	26.43		
2nlwA	105	26.64		
1ygsA	234	28.96	b.26.1.1	23907
2a8aA	439	29.25		
1yjmA	110	30.13	b.26.1.2	123427
2hsiA	282	30.20		
1x65A	89	31.78		
1xfxA	777	31.80		
1v9wA	130	34.72	c.47.1.16	108453
1x0cA	549	35.32		
2qkhA	135	38.01		
2ok8A	316	38.15		
2r5xA	129	40.44		
1nm1G	125	40.89	d.109.1.1	80653
1fdrA	248	41.44	b.43.4.2,c.25.1.1	25653,31543
1i7pA	274	42.53	b.43.4.2,c.25.1.1	66048,66049
1t6aA	126	44.74	d.129.8.1	106555
2p8iA	117	47.53	d.58.55.1	139522
1krhA	338	48.02	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1gpr	162	49.75		
1doiA	128	50.77	d.15.4.1	37676
1es6A	296	58.72	b.31.1.1,b.31.1.1	83048,83049
1xhvA	257	59.31	c.52.1.19	109597
1pm3A	78	61.07	b.41.1.2	94889
1ogoX	574	64.14	b.133.1.1,b.80.1.10	92925,92926
2gigA	257	64.65		
1bfd	528	64.76		
1pa7A	130	64.78	a.40.1.1	94410
2ns6A	185	65.54		
1hz6A	72	66.83	d.15.7.1	61429
2audA	257	74.65		
2o9uX	97	75.60	d.17.1.1	138960
2a97A	439	76.59		
1gudA	288	79.74	c.93.1.1	83326
1f3zA	161	80.85	b.84.3.1	28273
2jodA	106	83.17		
2gsmB	262	86.55	b.6.1.2,f.17.2.1	135590,135591
1bdfA	235	87.85	d.74.3.1,d.181.1.1	39727,42602
1molA	94	89.98	d.17.1.1	37988