# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1b0aA	288	8.598	c.2.1.7,c.58.1.2	30286,33934
2vdaA	828	16.96		
1molA	94	21.83	d.17.1.1	37988
2ns6A	185	27.25		
2gsmB	262	28.06	b.6.1.2,f.17.2.1	135590,135591
2o9uX	97	28.64	d.17.1.1	138960
2pwwA	127	32.48		
2aefA	234	33.95		
1u34A	119	34.14	g.76.1.1	107634
2a6hA	315	44.01	d.74.3.1,d.181.1.1	126260,126261
2r5xA	129	44.02		
1ygsA	234	52.70	b.26.1.1	23907
1syyA	346	54.60	a.25.1.2	106126
2fshA	853	60.50		
2a8aA	439	66.24		
2vbuA	136	76.27		
2ux9A	69	78.41		
1iseA	185	80.18	d.67.3.1	90691
3bb6A	127	87.29		
1hxvA	113	87.48	d.26.1.1	71089
1x65A	89	87.92		
2egtA	132	89.13		
1wqgA	185	89.65