# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	8.895		
2nsfA	261	14.74		
1y6hA	177	15.28	d.167.1.1	116505
2p8tA	200	15.58		
1xfuA	747	21.38		
2pwwA	127	22.40		
1b0aA	288	26.60	c.2.1.7,c.58.1.2	30286,33934
2a6hA	315	27.50	d.74.3.1,d.181.1.1	126260,126261
1pm3A	78	28.07	b.41.1.2	94889
1x65A	89	28.58		
2hsiA	282	30.53		
2nlwA	105	30.53		
1xfxA	777	32.08		
1ygsA	234	33.16	b.26.1.1	23907
1v9wA	130	36.58	c.47.1.16	108453
1bfd	528	37.94		
2p8iA	117	39.89	d.58.55.1	139522
2o6pA	161	42.66		
2r5xA	129	42.67		
2qkhA	135	43.08		
1t6aA	126	43.38	d.129.8.1	106555
1iseA	185	44.62	d.67.3.1	90691
1gudA	288	46.87	c.93.1.1	83326
2avtA	378	47.81		
2ns6A	185	50.94		
2a8aA	439	54.36		
1doiA	128	54.55	d.15.4.1	37676
1b77A	228	57.94	d.131.1.2,d.131.1.2	41362,41363
1pa7A	130	58.05	a.40.1.1	94410
1zxq	192	58.10		
2ok8A	316	60.45		
1jx7A	117	61.02	c.114.1.1	77195
1yjmA	110	62.24	b.26.1.2	123427
2p4bA	295	62.97		
2a5sA	284	74.07	c.94.1.1	126178
1es6A	296	74.72	b.31.1.1,b.31.1.1	83048,83049
2audA	257	75.17		
1i7pA	274	79.16	b.43.4.2,c.25.1.1	66048,66049
2aefA	234	79.19		
1fdrA	248	80.80	b.43.4.2,c.25.1.1	25653,31543
1q6zA	528	80.88	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
2oynA	146	86.81		
1xhvA	257	89.33	c.52.1.19	109597
1bdfA	235	89.72	d.74.3.1,d.181.1.1	39727,42602