# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2nsfA	261	13.41		
1b0aA	288	16.31	c.2.1.7,c.58.1.2	30286,33934
2vbuA	136	17.12		
1y6hA	177	17.15	d.167.1.1	116505
2p8tA	200	17.78		
1bfd	528	24.07		
2a6hA	315	24.84	d.74.3.1,d.181.1.1	126260,126261
1ygsA	234	27.34	b.26.1.1	23907
1x65A	89	28.03		
1gudA	288	31.80	c.93.1.1	83326
1xfuA	747	33.88		
2hsiA	282	34.99		
1doiA	128	35.62	d.15.4.1	37676
2o6pA	161	36.90		
2qkhA	135	40.67		
2nlwA	105	41.10		
1nm1G	125	44.91	d.109.1.1	80653
2a8aA	439	45.80		
2p8iA	117	47.14	d.58.55.1	139522
2ns6A	185	48.29		
1q6zA	528	48.62	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
1zxq	192	52.25		
2dri	271	53.56		
1v9wA	130	53.66	c.47.1.16	108453
1xfxA	777	54.22		
1es6A	296	56.17	b.31.1.1,b.31.1.1	83048,83049
2pwwA	127	60.11		
1pa7A	130	61.49	a.40.1.1	94410
2audA	257	61.73		
1xhvA	257	63.83	c.52.1.19	109597
1jx7A	117	67.40	c.114.1.1	77195
1t6aA	126	69.22	d.129.8.1	106555
1pm3A	78	70.44	b.41.1.2	94889
2gigA	257	75.47		
1ybhA	590	77.60	c.31.1.3,c.36.1.5,c.36.1.9	122891,122892,122893
2ok8A	316	77.91		
2aefA	234	80.10		
2eqaA	352	82.82		
1a65A	504	85.20	b.6.1.3,b.6.1.3,b.6.1.3	23148,23149,23150
1f3zA	161	88.18	b.84.3.1	28273