# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2nsfA	261	12.41		
2vbuA	136	14.12		
2p8tA	200	16.25		
1xfuA	747	20.76		
1xfxA	777	23.91		
1ygsA	234	24.05	b.26.1.1	23907
2hsiA	282	26.51		
1pm3A	78	28.16	b.41.1.2	94889
2a6hA	315	29.80	d.74.3.1,d.181.1.1	126260,126261
1nm1G	125	30.04	d.109.1.1	80653
1b0aA	288	31.50	c.2.1.7,c.58.1.2	30286,33934
2pwwA	127	33.65		
1v9wA	130	33.98	c.47.1.16	108453
2nlwA	105	34.07		
1t6aA	126	34.82	d.129.8.1	106555
1x65A	89	34.96		
1oqeA	144	37.82	b.22.1.1	87286
2aefA	234	39.46		
1gudA	288	39.53	c.93.1.1	83326
1y6hA	177	40.81	d.167.1.1	116505
2ok8A	316	41.39		
2o6pA	161	41.76		
2eqaA	352	43.43		
1yjmA	110	43.58	b.26.1.2	123427
1doiA	128	51.17	d.15.4.1	37676
2qkhA	135	53.17		
3cu5A	141	54.63		
2ns6A	185	54.68		
2audA	257	54.89		
2p8iA	117	54.97	d.58.55.1	139522
2jodA	106	56.31		
1qu6A	179	61.50	d.50.1.1,d.50.1.1	38784,38785
1pa7A	130	65.84	a.40.1.1	94410
1xhvA	257	65.94	c.52.1.19	109597
2r5xA	129	67.73		
2tnfA	156	70.25	b.22.1.1	23880
1es6A	296	72.60	b.31.1.1,b.31.1.1	83048,83049
1pymA	295	73.26	c.1.12.7	29308
2a5sA	284	74.79	c.94.1.1	126178
1fdrA	248	75.77	b.43.4.2,c.25.1.1	25653,31543
2gigA	257	77.71		
1mvoA	136	81.83	c.23.1.1	79513
1zxq	192	85.32		
1fx7A	230	86.66	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090