# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	11.11		
1ygsA	234	11.58	b.26.1.1	23907
2ns6A	185	16.17		
2nsfA	261	21.74		
2a6hA	315	23.92	d.74.3.1,d.181.1.1	126260,126261
1nm1G	125	25.11	d.109.1.1	80653
1t6aA	126	25.24	d.129.8.1	106555
2audA	257	27.65		
2p8tA	200	27.84		
2hsiA	282	32.92		
1pymA	295	33.62	c.1.12.7	29308
2pwwA	127	36.25		
1b0aA	288	36.41	c.2.1.7,c.58.1.2	30286,33934
1xhvA	257	36.48	c.52.1.19	109597
1b77A	228	36.59	d.131.1.2,d.131.1.2	41362,41363
2ok8A	316	37.17		
1pa7A	130	38.32	a.40.1.1	94410
1x65A	89	38.36		
2gigA	257	42.44		
2aefA	234	49.08		
1gpr	162	53.82		
1doiA	128	54.24	d.15.4.1	37676
1bfd	528	59.55		
1yjmA	110	60.83	b.26.1.2	123427
1v9wA	130	62.17	c.47.1.16	108453
1ro5A	201	63.78	d.108.1.3	105023
1bdfA	235	64.72	d.74.3.1,d.181.1.1	39727,42602
1iseA	185	65.02	d.67.3.1	90691
1y6hA	177	66.88	d.167.1.1	116505
2adcA	229	67.38	d.58.7.1,d.58.7.1	126582,126583
2eqaA	352	69.66		
1d4xG	126	72.73	d.109.1.1	59109
2nlwA	105	77.27		
2p8iA	117	77.31	d.58.55.1	139522
1gudA	288	79.70	c.93.1.1	83326
2jodA	106	84.16		
1jx7A	117	84.25	c.114.1.1	77195
1wqgA	185	84.30		
2a8aA	439	85.84		
1qu6A	179	86.49	d.50.1.1,d.50.1.1	38784,38785
2gsmB	262	87.50	b.6.1.2,f.17.2.1	135590,135591