# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	12.85		
1ygsA	234	15.14	b.26.1.1	23907
1nm1G	125	21.73	d.109.1.1	80653
2p8tA	200	23.92		
2pwwA	127	25.90		
2aefA	234	26.67		
2ns6A	185	27.57		
1v9wA	130	28.46	c.47.1.16	108453
2a6hA	315	28.97	d.74.3.1,d.181.1.1	126260,126261
1x65A	89	29.48		
2nsfA	261	29.80		
1y6hA	177	32.32	d.167.1.1	116505
1t6aA	126	32.84	d.129.8.1	106555
2audA	257	34.79		
1iseA	185	35.65	d.67.3.1	90691
1es6A	296	38.18	b.31.1.1,b.31.1.1	83048,83049
2qkhA	135	41.64		
2r5xA	129	42.60		
1pymA	295	43.87	c.1.12.7	29308
2a8aA	439	45.43		
2hsiA	282	45.61		
2nlwA	105	46.45		
1xfuA	747	47.49		
1fdrA	248	49.72	b.43.4.2,c.25.1.1	25653,31543
1yjmA	110	49.75	b.26.1.2	123427
1pm3A	78	50.54	b.41.1.2	94889
1qu6A	179	51.50	d.50.1.1,d.50.1.1	38784,38785
2ok8A	316	52.90		
1pa7A	130	53.86	a.40.1.1	94410
1gudA	288	54.81	c.93.1.1	83326
1d4xG	126	56.87	d.109.1.1	59109
1doiA	128	60.63	d.15.4.1	37676
2gigA	257	62.30		
1we3O	100	65.15	b.35.1.1	109330
1xfxA	777	65.46		
1xhvA	257	66.26	c.52.1.19	109597
2o6pA	161	66.38		
2a5sA	284	67.10	c.94.1.1	126178
1b77A	228	67.90	d.131.1.2,d.131.1.2	41362,41363
1jx7A	117	70.79	c.114.1.1	77195
1q02A	52	75.39	a.5.2.1	95490
1oqeA	144	78.95	b.22.1.1	87286
2p8iA	117	79.89	d.58.55.1	139522
1b0aA	288	80.04	c.2.1.7,c.58.1.2	30286,33934
1bfd	528	80.42		
1w1wE	121	83.36	a.4.5.57	114084
2jodA	106	84.09