# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1v9wA	130	10.26	c.47.1.16	108453
2a6hA	315	21.82	d.74.3.1,d.181.1.1	126260,126261
2p8tA	200	24.59		
1x54A	434	32.87		
2vbuA	136	36.62		
1krhA	338	41.45	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1yjmA	110	42.38	b.26.1.2	123427
1ex2A	189	45.40	c.51.4.2	33225
2c5aA	379	48.12	c.2.1.2	129894
1deoA	233	53.98	c.23.10.4	31345
2qkhA	135	60.14		
1wouA	123	60.76	c.47.1.16	109471
1syyA	346	63.00	a.25.1.2	106126
1q02A	52	66.73	a.5.2.1	95490
1gudA	288	72.90	c.93.1.1	83326
2jodA	106	73.73		
2q01A	497	78.56		
2ns6A	185	78.96		
2pwwA	127	78.97		
1iseA	185	86.28	d.67.3.1	90691
1bdfA	235	87.50	d.74.3.1,d.181.1.1	39727,42602
1doiA	128	87.90	d.15.4.1	37676