# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0wA 580 1.131 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1x54A 434 1.799 2bqxA 173 3.952 1b8aA 438 7.379 b.40.4.1,d.104.1.1 25244,40765 2bgiA 272 8.064 1quqB 121 9.004 b.40.4.3 25305 2crvA 120 9.584 2fwvA 226 10.32 2hzqA 174 11.47 2gnrA 145 14.56 1xaoA 121 15.47 1lylA 504 15.75 b.40.4.1,d.104.1.1 25261,40717 1i7pA 274 15.82 b.43.4.2,c.25.1.1 66048,66049 2vbuA 136 16.17 2vl6A 268 16.52 1vjfA 180 16.98 d.116.1.1 100809 1d8hA 311 18.08 d.63.1.1 39544 2gfaA 119 19.80 b.34.9.1,b.34.9.1 135089,135090 2qw7A 111 19.84 2qqrA 118 20.88 2onfA 140 22.01 1j2gA 319 22.75 d.96.1.4,d.96.1.4 103824,103825 2egtA 132 22.84 2ebeA 106 23.37 1qx4A 274 23.38 b.43.4.2,c.25.1.1 104624,104625 2oynA 146 24.35 1k9vF 201 24.50 c.23.16.1 68365 2pi2E 142 24.66 2awgA 118 25.14 1i40A 175 26.18 b.40.5.1 66024 1jb0D 138 26.76 d.187.1.1 62823 2piaA 321 27.08 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3ba3A 145 29.42 1gmuA 143 29.55 b.107.1.1,d.58.38.1 65335,65336 2qzbA 166 30.27 1qcsA 211 30.69 b.52.2.3,d.31.1.1 26927,38461 3ezmA 101 30.76 b.89.1.1 28395 1tr7A 164 31.12 b.2.3.2 119328 1a8pA 258 31.19 b.43.4.2,c.25.1.1 25654,31544 2e2dC 180 32.20 b.40.3.1 131980 1f0nA 285 32.72 c.69.1.3 34636 2afwA 329 33.46 c.56.5.8 126707 2uubL 135 35.22 b.40.4.5 139943 2hd3A 103 36.12 2au7A 175 36.38 2gpjA 252 37.00 1r4kA 169 37.99 b.34.14.1 96997 2ox7A 155 38.29 1ltlA 279 40.28 b.40.4.11 84701 1uwfA 158 41.06 b.2.3.2 119758 1fnc 314 43.00 3bjuA 521 43.10 1fndA 314 44.53 b.43.4.2,c.25.1.1 25626,31516 2q66A 525 45.07 2pwwA 127 45.26 1o7iA 119 45.93 b.40.4.3 86642 1e1oA 504 46.83 b.40.4.1,d.104.1.1 25258,40714 2jn9A 105 47.56 3co8A 380 52.08 2eixA 243 52.50 2acoA 173 54.91 2gjdA 157 55.79 1se8A 301 56.04 b.40.4.3 105448 2fxqA 264 58.62 1n9pA 207 59.86 b.1.18.16 80343 1rocA 155 61.42 b.1.22.1 97673 2qtsA 438 61.78 2d7vA 162 61.88 1twlA 186 63.12 b.40.5.1 112764 2hhpA 530 63.92 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 2b7yA 182 64.77 1q7fA 286 65.24 b.68.9.1 96036 2grrA 161 65.40 1pvc3 238 65.92 3brnA 157 66.52 1vkiA 181 66.56 d.116.1.1 108664 1om1A 332 66.62 d.144.1.7 93347 1go2A 304 67.36 b.43.4.2,c.25.1.1 76243,76244 1fdr 248 67.77 1zkdA 387 67.97 c.66.1.52 125184 2o9uX 97 69.14 d.17.1.1 138960 2vqzA 166 69.18 2pbcA 102 69.22 1ep3B 262 70.97 b.43.4.2,c.25.1.3 25664,31554 2cwrA 103 71.73 1lkeA 184 72.10 b.60.1.1 84622 2biwA 490 72.14 2e8eA 132 74.94 2yzhA 171 75.49 1sy6A 204 75.96 b.1.1.4,b.1.1.4 106111,106112 2qdxA 257 75.96 1jjfA 268 78.04 c.69.1.2 66765 1ogiA 303 78.71 b.43.4.2,c.25.1.1 92914,92915 1je5A 206 82.04 b.40.4.7 62909 1fdrA 248 82.06 b.43.4.2,c.25.1.1 25653,31543 2g8mA 264 82.39 2cu9A 161 82.90 1qqqA 264 83.72 d.117.1.1 40931 2vfxA 206 84.25 1s9jA 341 87.13 d.144.1.7 112049 2ppnA 107 87.18 1zn6A 227 87.56 d.303.1.1 125373 1r4uA 301 87.61 d.96.1.4,d.96.1.4 97047,97048 1bbt1 213 87.67 1i1qB 192 88.43 c.23.16.1 61544