# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w7jB	151	2.131	a.39.1.5	120690
1z2zA	446	7.160		
2g3mA	693	8.017		
2fe8A	315	8.302		
1xsjA	778	13.47	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1rypC	244	14.67	d.153.1.4	41934
2qmjA	870	20.55		
2b1kA	168	23.79		
2f2hA	773	26.24	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2phcB	225	28.00		
2gqbA	130	28.45		
2qycA	103	29.81		
1vejA	74	30.44	a.5.2.1	120020
1p32A	209	32.27	d.25.1.1	38379
1rykA	69	33.62	a.60.11.1	98105
1z5hA	780	39.36		
2iwrA	178	40.73		
2yxtA	312	43.43		
1thgA	544	52.32	c.69.1.17	34763
1ge9A	184	58.28	d.67.3.1	60463
1qh5A	260	60.27	d.157.1.2	42057
1ze3D	125	62.35	b.167.1.1	124976
2pbeA	294	62.48		
2g0bA	198	63.25		
1z5yE	149	64.27	c.47.1.10	124498
2hq7A	146	65.66	b.45.1.1	136657
1qs0A	407	67.35	c.36.1.11	31829
1si7A	369	67.57	d.265.1.4	98883
1ywuA	149	67.87	b.45.2.1	124164
1sxjE	354	68.53	a.80.1.1,c.37.1.20	106089,106090
2hbpA	68	68.95		
1njgA	250	70.84	c.37.1.20	85785
2q78A	153	72.99		
1wr1B	58	73.11	a.5.2.1	121185
2a19A	175	75.43		
1brwA	433	78.46	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
2fy6A	143	79.56	c.47.1.10	134344
1r5lA	262	81.53	a.5.3.1,c.13.1.1	97099,97100
1sv0C	82	81.55	a.60.1.1	106037
1j9iA	68	84.04	a.6.1.5	71619
1x3mA	415	85.76	c.55.1.2,c.55.1.2	121664,121665
2hq2A	354	86.06	e.62.1.1	136656