# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w7jB	151	4.947	a.39.1.5	120690
1z2zA	446	15.32		
2qycA	103	15.87		
1rypC	244	18.34	d.153.1.4	41934
2qmjA	870	20.04		
1xsjA	778	27.57	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2g3mA	693	29.00		
1f5vA	240	44.89	d.90.1.1	40255
1z5hA	780	45.04		
2vqeR	88	54.58		
1b22A	114	56.16	a.60.4.1	17969
1njgA	250	57.42	c.37.1.20	85785
2f2hA	773	59.42	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
3cuoA	99	67.33		
2g0bA	198	71.14		
1ynuA	473	73.24	c.67.1.4	123762
1f4qA	165	78.35	a.39.1.8	17360
2po3A	424	82.01		
3bm1A	183	84.69		
2phcB	225	86.13		
3bixA	574	88.99