# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	2.798		
2qycA	103	3.029		
1rypC	244	7.526	d.153.1.4	41934
1t3wA	148	11.25	a.236.1.1	112233
2obhA	143	11.57		
2vqeR	88	11.71		
1thgA	544	12.35	c.69.1.17	34763
1topA	162	12.39	a.39.1.5	17223
2uubR	88	12.57	a.4.8.1	139949
1ng6A	148	13.29	a.182.1.1	85670
1a2xA	159	15.01	a.39.1.5	17251
3bixA	574	16.89		
2g0bA	198	18.23		
1qs0A	407	18.93	c.36.1.11	31829
1kl9A	182	21.18	a.60.14.1,b.40.4.5	111574,111575
1wdcC	156	21.26	a.39.1.5	17317
1s1eA	224	21.59	a.39.1.5	112007
2iwrA	178	22.59		
1w7jB	151	23.66	a.39.1.5	120690
1exrA	148	25.55	a.39.1.5	17299
2qmjA	870	26.65		
2pqgA	265	28.45		
1g33A	73	28.67	a.39.1.4	65121
1ub4A	110	28.98	b.34.6.2	88399
1xsjA	778	30.57	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2g3mA	693	31.92		
2fywA	267	34.54	c.135.1.1	134408
2gv5A	161	36.09		
1alvA	173	36.36	a.39.1.8	17370
2jfrA	234	40.44		
2ovkC	159	40.87		
1uspA	139	40.99	d.227.1.1	99879
1ynuA	473	41.06	c.67.1.4	123762
2ct9A	208	42.23		
2o5gA	148	46.34		
1d0qA	103	46.43	g.41.3.2	45208
1ge9A	184	46.94	d.67.3.1	60463
1y56B	382	47.60		
1ncx	162	48.06		
2f3yA	148	48.90		
1q46A	175	49.00	a.60.14.1,b.40.4.5	111594,111595
3bm1A	183	49.39		
1rwyA	109	51.67	a.39.1.4	98002
1br1B	150	53.17	a.39.1.5	17309
2gkpA	167	54.97		
2z69A	154	55.02		
2bl0B	145	57.40		
1kk8B	139	58.30	a.39.1.5	77430
1txoA	237	59.26	d.219.1.1	112781
1n2fA	142	59.31	d.227.1.1	79853
1q87A	221	59.68	e.47.1.1	96192
1brwA	433	62.70	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1ps9A	671	64.47	c.1.4.1,c.3.1.1,c.4.1.1	95076,95077,95078
1qh5A	260	65.97	d.157.1.2	42057
1b22A	114	66.47	a.60.4.1	17969
1n62B	809	66.56	d.41.1.1,d.133.1.1	80092,80093
1fjgM	126	66.66	a.156.1.1	16293
1wdcB	156	68.50	a.39.1.5	17302
2bceA	585	69.73	c.69.1.1	34625
1u9lA	70	71.52	a.60.4.2	107751
2q3pA	112	73.32	d.58.4.4	139798
2nxnB	147	73.33		
1g1xC	88	78.75	a.4.8.1	16249
1zb9A	143	80.66		
2i7hA	189	80.89		
2rkuA	294	81.05		
2qalM	117	82.05		
1vyrA	364	82.11	c.1.4.1	108906
2hmvA	144	83.56	c.2.1.9	136615
1icpA	376	85.98	c.1.4.1	62270
2h8zA	359	88.13