# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w7jB	151	4.476	a.39.1.5	120690
1z2zA	446	10.69		
2g3mA	693	12.32		
1xsjA	778	20.59	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2qmjA	870	21.21		
2vqeR	88	26.00		
1rypC	244	30.04	d.153.1.4	41934
2qycA	103	30.37		
1thgA	544	35.76	c.69.1.17	34763
2f2hA	773	40.83	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2fe8A	315	40.91		
1mldA	314	41.58	c.2.1.5,d.162.1.1	30122,42089
3bixA	574	42.22		
2uubR	88	42.26	a.4.8.1	139949
2b1kA	168	42.79		
2g0bA	198	54.47		
1jf0A	195	59.89	a.39.1.5	62926
1zroA	602	63.75	a.264.1.1,a.264.1.1	125551,125552
1z5hA	780	66.65		
1lm4A	194	67.70	d.167.1.1	84626
2a19A	175	68.00		
2mysB	166	70.14	a.39.1.5	17308
2oibA	301	72.72		
1t3wA	148	78.02	a.236.1.1	112233
1exrA	148	81.69	a.39.1.5	17299
2fy6A	143	83.44	c.47.1.10	134344
2pqgA	265	85.57		
2rldA	121	87.49		
1f5vA	240	87.74	d.90.1.1	40255
2g2bA	150	88.86		
1g33A	73	89.90	a.39.1.4	65121