# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2scpA 174 0.4659 a.39.1.5 17256 1z2zA 446 0.8812 1exrA 148 0.8895 a.39.1.5 17299 2obhA 143 0.996 2ct9A 208 1.271 2gv5A 161 1.478 1p32A 209 1.615 d.25.1.1 38379 2o5gA 148 1.779 1a2xA 159 2.275 a.39.1.5 17251 2f2hA 773 2.756 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1cll 148 2.783 1jf0A 195 2.978 a.39.1.5 62926 1w7jB 151 3.410 a.39.1.5 120690 1ggzA 148 3.807 a.39.1.5 70176 1ncx 162 4.043 1mvwC 147 4.222 i.15.1.1 79525 2bl0C 142 4.529 1v8hA 107 4.762 b.1.18.19 119870 2owbA 335 4.907 1mvwB 145 5.273 i.15.1.1 79524 1si7A 369 6.028 d.265.1.4 98883 1y1xA 191 6.330 a.39.1.8 116374 1aj5A 173 6.667 a.39.1.8 17367 1auiB 169 6.717 a.39.1.5 17325 1z5hA 780 6.844 1p1jA 533 7.514 c.2.1.3,d.81.1.3 87687,87688 1f4qA 165 8.016 a.39.1.8 17360 1wdcB 156 9.276 a.39.1.5 17302 2ovkC 159 9.811 1wdcC 156 11.61 a.39.1.5 17317 2f3yA 148 13.48 1hqvA 191 14.85 a.39.1.8 61160 2qycA 103 15.58 1wlzA 105 17.94 a.39.1.7 121024 2fe8A 315 19.54 1rcuA 195 19.70 c.129.1.1 97295 1wr8A 231 21.00 c.108.1.10 114836 1de4C 640 22.34 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1cx8A 639 23.02 a.48.2.1,c.8.4.1,c.56.5.5 17782,30763,33851 1f0cA 305 23.52 e.1.1.1 42676 1np3A 338 23.82 a.100.1.2,c.2.1.6 85946,85947 1pszA 303 23.95 c.92.2.2 35600 1ywuA 149 24.81 b.45.2.1 124164 1lm4A 194 26.13 d.167.1.1 84626 1ehiA 377 26.91 c.30.1.2,d.142.1.1 31716,41484 1z41A 338 28.09 c.1.4.1 124421 3c61A 314 29.08 2boyA 254 30.01 1dloA 556 30.70 c.55.3.1,e.8.1.2 33584,43040 1y0pA 571 30.79 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1eetA 557 31.97 c.55.3.1,e.8.1.2 33608,43078 1nq7A 244 32.17 a.123.1.1 92047 1lbd 282 32.68 2q78A 153 32.88 1k3bA 119 32.94 b.61.5.1 72016 1b22A 114 33.52 a.60.4.1 17969 2pajA 492 33.61 2mysB 166 33.63 a.39.1.5 17308 2b1kA 168 35.54 2yxtA 312 37.67 2d1cA 496 38.72 1lmeA 176 39.64 d.167.1.1 84629 1g33A 73 41.79 a.39.1.4 65121 1wy9A 147 41.83 2ef0A 301 43.37 1x31B 404 45.52 1kfuS 184 47.22 a.39.1.8 68574 2vqeR 88 48.00 1lf6A 684 49.92 a.102.1.5,b.30.5.5 77918,77919 1ze3D 125 50.64 b.167.1.1 124976 1hniA 558 52.22 c.55.3.1,e.8.1.2 33586,43044 2aaoA 166 54.06 2h8nA 112 54.07 2uubR 88 54.48 a.4.8.1 139949 1lrzA 426 54.71 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1rypG 244 55.37 d.153.1.4 41938 2dpiA 420 56.16 d.240.1.1,e.8.1.7 131612,131613 2po3A 424 56.49 1rwyA 109 56.88 a.39.1.4 98002 1v97A 1332 57.36 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 2os0A 188 58.42 2h1tA 188 59.03 1qs0A 407 59.66 c.36.1.11 31829 1alvA 173 59.84 a.39.1.8 17370 1t3wA 148 62.05 a.236.1.1 112233 1wxxA 382 62.42 b.122.1.9,c.66.1.51 121418,121419 1ayzA 169 64.56 d.20.1.1 38326 1sflA 238 65.21 c.1.10.1 112077 1nowA 507 66.04 c.1.8.6,d.92.2.1 85936,85937 1vgvA 384 67.91 c.87.1.3 100608 2eutA 294 68.25 a.93.1.1 132407 1jovA 270 68.56 b.30.5.7 84192 1hxs3 237 70.44 1amp 291 70.57 2i5gA 325 72.09 1f5vA 240 74.62 d.90.1.1 40255 1sh7A 284 76.93 1el4A 195 79.19 a.39.1.5 59453 1ov2A 99 80.49 a.13.1.1 93580 1n5nA 180 84.77 d.167.1.1 85336 1ru8A 232 85.66 c.26.2.1 97849 1ub4A 110 86.00 b.34.6.2 88399 1qksA 567 86.53 a.3.1.2,b.70.2.1 15951,27710 1obrA 326 87.41 c.56.5.2 33828 2f1sA 186 87.76 2ar0A 541 88.87 c.66.1.45 127185