# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w7jB	151	1.676	a.39.1.5	120690
1z2zA	446	5.556		
2g3mA	693	11.70		
1xsjA	778	13.39	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2qmjA	870	15.90		
1rypC	244	16.68	d.153.1.4	41934
2qycA	103	18.09		
2f2hA	773	26.91	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2g0bA	198	31.91		
1f5vA	240	38.88	d.90.1.1	40255
1z5hA	780	40.10		
1njgA	250	42.92	c.37.1.20	85785
3bm1A	183	53.64		
2phcB	225	56.73		
1sxjE	354	64.50	a.80.1.1,c.37.1.20	106089,106090
3cuoA	99	67.19		
1thgA	544	68.54	c.69.1.17	34763
2b1kA	168	70.18		
1pxvA	183	78.27	d.3.1.1	95301
1qhdA	398	78.67	a.115.1.2,b.19.1.1	63324,63325
2yxtA	312	80.11		
2vqeR	88	81.86		
1t3wA	148	82.03	a.236.1.1	112233
3bixA	574	83.25		
2iskA	230	83.45		
1ynuA	473	88.83	c.67.1.4	123762
1ub4A	110	89.78	b.34.6.2	88399