# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w7jB	151	3.798	a.39.1.5	120690
1z2zA	446	5.289		
2g3mA	693	9.669		
1xsjA	778	10.57	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
2qycA	103	12.43		
2qmjA	870	12.47		
1rypC	244	19.74	d.153.1.4	41934
2f2hA	773	22.80	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
1njgA	250	30.87	c.37.1.20	85785
2vqeR	88	41.26		
1sxjE	354	54.91	a.80.1.1,c.37.1.20	106089,106090
1thgA	544	57.08	c.69.1.17	34763
2g0bA	198	57.44		
1z5hA	780	58.29		
1p32A	209	62.08	d.25.1.1	38379
1fntc	245	63.11		
2uubR	88	64.74	a.4.8.1	139949
2a19A	175	76.69		
1f5vA	240	78.29	d.90.1.1	40255
1sv0C	82	83.21	a.60.1.1	106037
2fe8A	315	87.29		
1ywuA	149	88.84	b.45.2.1	124164