# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w7jB	151	1.978	a.39.1.5	120690
2g0bA	198	3.002		
2i7hA	189	3.877		
2vqeR	88	4.207		
2pqgA	265	6.326		
2a19A	175	6.976		
2fmyA	220	8.395		
3bm1A	183	9.265		
2bshA	125	10.09		
2uubR	88	12.78	a.4.8.1	139949
1br1B	150	13.22	a.39.1.5	17309
1jf0A	195	14.19	a.39.1.5	62926
2qycA	103	16.78		
2ywlA	180	20.41		
1fxzA	476	24.02	b.82.1.2,b.82.1.2	65059,65060
1a2xA	159	24.84	a.39.1.5	17251
1noxA	205	25.65	d.90.1.1	40242
1psrA	100	29.68	a.39.1.2	17180
1wdcC	156	30.33	a.39.1.5	17317
1topA	162	31.42	a.39.1.5	17223
1wlzA	105	31.53	a.39.1.7	121024
2pqqA	149	33.82		
2g6tA	306	34.04	c.147.1.1	134717
1icfI	65	35.67	g.28.1.1	44958
2obhA	143	36.43		
2bl0B	145	38.40		
1i6xA	209	38.63	a.4.5.4,b.82.3.2	83673,83674
2gv5A	161	39.81		
1wzaA	488	41.44	b.71.1.1,c.1.8.1	121489,121490
2anxA	146	41.55		
2po3A	424	42.84		
1u02A	239	43.65	c.108.1.15	107538
1ggzA	148	43.81	a.39.1.5	70176
1s1eA	224	44.69	a.39.1.5	112007
1nh1A	330	45.19	e.45.1.1	91871
1vqoB	338	45.22	b.43.3.2	120363
2ovkC	159	45.92		
2iwrA	178	45.97		
1q1aA	289	46.88	c.31.1.5	95561
1rec	201	48.11		
1jk0B	345	51.54	a.25.1.2	63143
2rffA	111	51.63		
1d5cA	162	51.95	c.37.1.8	32021
1d0qA	103	52.96	g.41.3.2	45208
1t3wA	148	52.98	a.236.1.1	112233
1dmuA	299	54.60	c.52.1.4	33294
1ncx	162	54.96		
1z0jA	170	55.51	c.37.1.8	124319
1vp6A	138	56.88	b.82.3.2	113939
3rabA	169	57.27	c.37.1.8	32018
2ct9A	208	57.71		
1x1mA	107	57.83	d.15.1.1	121592
2qacA	146	60.03		
2v89A	82	60.63		
2ct7A	86	61.27	g.44.1.4	130791
2q5iA	691	61.54		
2fywA	267	63.95	c.135.1.1	134408
2iskA	230	64.26		
1ub4A	110	64.56	b.34.6.2	88399
3b9pA	297	64.60		
1z2aA	168	66.94	c.37.1.8	124374
1z08A	170	68.46	c.37.1.8	124303
2fn4A	181	68.99	c.37.1.8	133806
1yzqA	170	69.29	c.37.1.8	124286
2sns	149	71.97		
1wj7A	104	73.29	a.5.2.1	120976
1oixA	191	77.45	c.37.1.8	118710
1tnsA	76	77.71	a.6.1.7	16228
1zchA	255	79.99	d.90.1.1	124908
2bhoA	130	80.48		
1no5A	114	81.13	d.218.1.5	92014
2atxA	194	82.03	c.37.1.8	127315
2z69A	154	84.06		
1faaA	124	86.38	c.47.1.1	32738
1ynuA	473	87.00	c.67.1.4	123762
1y0vH	146	87.81		
1a4rA	191	88.26	c.37.1.8	32063
2cb8A	87	88.45