# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qycA	103	4.786		
1w7jB	151	6.979	a.39.1.5	120690
2g0bA	198	8.922		
2g3mA	693	8.923		
2pqgA	265	9.666		
2a19A	175	10.07		
1xsjA	778	11.49	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1wdcC	156	12.69	a.39.1.5	17317
1br1B	150	19.28	a.39.1.5	17309
3canA	182	19.77		
2bshA	125	20.92		
1n62B	809	22.07	d.41.1.1,d.133.1.1	80092,80093
3b9pA	297	24.26		
2f2hA	773	25.05	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2ovkC	159	28.64		
3bixA	574	35.11		
2qacA	146	43.10		
1f5vA	240	44.62	d.90.1.1	40255
2vqeR	88	46.46		
2bl0B	145	50.59		
1topA	162	52.66	a.39.1.5	17223
1faaA	124	52.93	c.47.1.1	32738
2i7hA	189	54.21		
1ynuA	473	54.93	c.67.1.4	123762
1q46A	175	55.62	a.60.14.1,b.40.4.5	111594,111595
1noxA	205	57.75	d.90.1.1	40242
2gv5A	161	58.16		
1a2xA	159	59.75	a.39.1.5	17251
1thgA	544	63.32	c.69.1.17	34763
2sns	149	63.60		
1bcsA	263	65.15	c.69.1.5	34647
1k8kF	168	70.16	d.198.2.1	68312
1alvA	173	70.34	a.39.1.8	17370
1whsA	255	70.60	c.69.1.5	34649
2uubR	88	72.14	a.4.8.1	139949
2obhA	143	73.05		
1ze3D	125	75.66	b.167.1.1	124976
1qs0A	407	77.35	c.36.1.11	31829
2anxA	146	78.69		
2qmjA	870	79.11		
2iwrA	178	79.83		
1mmsA	140	80.41	a.4.7.1,d.47.1.1	16247,38766
3bm1A	183	80.50		
3bjhA	119	80.57		
2etxA	209	83.05		
2ct9A	208	83.68		
1y0vH	146	84.43		
1exrA	148	84.63	a.39.1.5	17299
1wj7A	104	86.50	a.5.2.1	120976
1psrA	100	86.76	a.39.1.2	17180
487dL	133	89.02	i.1.1.2	45839
2phcB	225	89.85