# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o5gA 148 1.036 1s4qA 228 2.101 c.37.1.1 98507 2an9A 207 2.116 c.37.1.1 127037 2obhA 143 3.578 2a1vA 144 6.783 d.198.3.1 126019 2gukA 120 6.792 1znwA 207 6.959 c.37.1.1 125412 1ex7A 186 7.546 c.37.1.1 59537 2ovkC 159 9.071 1rwyA 109 10.34 a.39.1.4 98002 1cy9A 264 10.35 e.10.1.1 43236 1gky 187 10.50 1u7kA 131 12.49 a.73.1.1 113087 2iwrA 178 13.41 2g6bA 180 15.50 c.37.1.8 134701 2f3yA 148 16.39 1z8fA 228 17.00 1z6gA 218 17.78 1wdcB 156 20.90 a.39.1.5 17302 2qmlA 198 23.00 2ew2A 316 24.47 2gv5A 161 24.53 2hjqA 111 25.04 2ao9A 155 25.51 a.4.1.17 127069 1lssA 140 27.18 c.2.1.9 74246 1nrgA 261 27.83 b.45.1.1 80694 2bl0B 145 28.05 1y1xA 191 29.35 a.39.1.8 116374 1a2xA 159 29.99 a.39.1.5 17251 2bl0C 142 30.43 3cryA 188 30.79 1ehwA 162 30.89 d.58.6.1 39088 1s96A 219 31.08 c.37.1.1 98740 1gw5S 142 31.09 d.110.4.2 70633 2f4qA 346 31.34 1qvbA 481 33.93 c.1.8.4 28983 2b5aA 77 34.82 a.35.1.3 127882 2i00A 406 36.27 2zhgA 154 38.90 1vyrA 364 40.21 c.1.4.1 108906 1e5rA 290 42.31 b.82.2.4 59276 2pbeA 294 42.73 1pvaA 110 43.54 a.39.1.4 17207 2hxsA 178 45.38 1f7cA 231 46.22 a.116.1.1 19107 1lsuA 147 46.91 c.2.1.9 74250 3c18A 290 47.60 2a9kA 187 47.66 c.37.1.8 126442 1xppA 115 47.84 d.74.3.2 115768 2vglS 142 48.74 1zd0A 150 50.30 d.329.1.1 124927 1bouA 139 51.89 a.88.1.1 18521 1lbkA 208 52.02 a.45.1.1,c.47.1.5 73809,73810 1nrwA 288 53.57 c.108.1.10 86128 1wdcC 156 54.57 a.39.1.5 17317 1i6lA 328 54.89 c.26.1.1 66041 1dapA 320 57.08 c.2.1.3,d.81.1.3 30053,39968 3byiA 214 58.22 1f20A 435 60.17 b.43.4.1,c.25.1.4 64932,64933 2gf9A 189 60.99 1ucpA 91 61.84 a.77.1.5 99186 1mvwB 145 63.77 i.15.1.1 79524 2hurA 142 64.09 1xo5A 183 64.47 a.39.1.5 115680 1em9A 154 64.62 a.73.1.1 18333 1ak4C 145 65.45 a.73.1.1 18321 3d5lA 221 66.52 2h5xA 196 68.57 1acfA 125 70.86 d.110.1.1 40882 1kaoA 167 72.45 c.37.1.8 32014 1dnlA 199 73.37 b.45.1.1 25753 1kk8B 139 73.54 a.39.1.5 77430 1sl8A 191 73.75 a.39.1.5 112099 3rabA 169 74.81 c.37.1.8 32018 1xneA 113 76.12 b.122.1.6 115579 2qorA 204 78.24 2qacA 146 78.55 1vqoW 154 78.58 d.59.1.1 120384 2fn4A 181 81.88 c.37.1.8 133806 17gsA 210 82.28 a.45.1.1,c.47.1.5 17524,32818 1t3wA 148 82.97 a.236.1.1 112233 1sf8A 126 84.97 d.271.1.1 105472 1k8wA 327 89.80 b.122.1.1,d.265.1.2 83094,90388 2scpA 174 89.99 a.39.1.5 17256