# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p3wA	404	6.509	c.67.1.3	87752
1wdcB	156	19.44	a.39.1.5	17302
2raqA	97	24.26		
1i8oA	114	30.95	a.3.1.1	61979
1wdcC	156	37.33	a.39.1.5	17317
1t6sA	162	39.40	a.4.5.60,a.4.5.60	112271,112272
2h30A	164	39.96		
2gmgA	105	45.73		
1t95A	240	51.51	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1w85B	324	56.10	c.36.1.7,c.48.1.2	114336,114337
1s6yA	450	58.54	c.2.1.5,d.162.1.2	105314,105315
1jdlA	121	59.76	a.3.1.1	66557
1gp1A	198	60.43	c.47.1.10	33059
1kmkA	406	61.05	c.67.1.3	68696
2g2kA	170	62.36		
2scpA	174	64.57	a.39.1.5	17256
1p9qC	256	68.94	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2gv5A	161	77.61		
2pefA	373	82.24		
1t3iA	420	83.62	c.67.1.3	106354
2o8iA	165	87.81