# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p3wA	404	12.86	c.67.1.3	87752
1wdcB	156	17.83	a.39.1.5	17302
1wdcC	156	20.27	a.39.1.5	17317
2raqA	97	22.06		
1i8oA	114	28.14	a.3.1.1	61979
2h30A	164	29.11		
2gmgA	105	29.27		
1xe7A	203	36.65	b.82.1.16	115213
1p9qC	256	41.04	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
1t6sA	162	42.83	a.4.5.60,a.4.5.60	112271,112272
2o8iA	165	44.81		
2gv5A	161	48.76		
1jdlA	121	51.39	a.3.1.1	66557
2oucA	142	54.21		
1t95A	240	54.69	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1s6yA	450	60.46	c.2.1.5,d.162.1.2	105314,105315
2ebbA	101	61.05		
2zbtA	297	62.75		
2i5tA	188	64.43		
2pefA	373	65.04		
2hyxA	352	68.09		
3ce7A	107	68.91		
1q77A	138	74.63	c.26.2.4	96023
1iibA	106	76.83	c.44.2.1	32648
2scpA	174	77.56	a.39.1.5	17256
1gp1A	198	78.36	c.47.1.10	33059
2b1kA	168	79.39		
1a2xA	159	83.58	a.39.1.5	17251
2sasA	185	85.59	a.39.1.5	17258
2etxA	209	86.11		
1ijqA	316	87.78	b.68.5.1,g.3.11.1	62506,62507
2ccmA	191	89.34