# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p9qC	256	4.757	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2raqA	97	6.695		
1t95A	240	12.97	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2h30A	164	15.95		
2zbtA	297	20.45		
1p3wA	404	22.59	c.67.1.3	87752
1wdcB	156	22.98	a.39.1.5	17302
2hjhA	354	23.07		
1wdcC	156	24.63	a.39.1.5	17317
2qs7A	144	25.54		
1f9mA	112	25.64	c.47.1.1	32736
2fe8A	315	30.01		
1jdlA	121	30.18	a.3.1.1	66557
2b1kA	168	32.37		
2ccmA	191	35.24		
2gmgA	105	36.54		
2bwbA	46	36.60	a.5.2.1	129329
1i8oA	114	38.85	a.3.1.1	61979
1jetA	517	40.41	c.94.1.1	35718
1ra6A	461	43.12	e.8.1.4	104879
1ynrA	80	43.96	a.3.1.1	123750
2gqbA	130	44.84		
1iibA	106	47.75	c.44.2.1	32648
2c4eA	302	48.09		
3ce7A	107	50.36		
2j6bA	109	50.49	d.321.1.1	138078
2e6fA	314	53.44		
2gv5A	161	56.08		
2phcB	225	56.28		
1w7jB	151	57.62	a.39.1.5	120690
1nnwA	252	60.74	d.159.1.5	80674
2g3mA	693	63.55		
2f2cA	254	63.77	a.74.1.1,a.74.1.1	132805,132806
2pibA	216	63.85		
3d2lA	243	68.97		
2b1pA	355	72.20	d.144.1.7	127672
2scpA	174	73.56	a.39.1.5	17256
3ctkA	248	74.01		
1tkiA	321	76.54	d.144.1.7	41638
2gkpA	167	77.39		
3bpdA	100	77.79		
2in0A	139	79.11		
2j0pA	345	79.12	e.62.1.1	137903
1kmkA	406	79.38	c.67.1.3	68696
1t6sA	162	79.59	a.4.5.60,a.4.5.60	112271,112272
1xngA	268	79.96	c.26.2.1	122186
1iloA	77	80.01	c.47.1.1	66205
1uhnA	189	85.24	a.39.1.5	99399
2qxlA	658	87.63		
1a2xA	159	89.14	a.39.1.5	17251