# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2raqA	97	18.90		
1wdcB	156	20.17	a.39.1.5	17302
1p3wA	404	20.57	c.67.1.3	87752
2gv5A	161	35.83		
1p9qC	256	39.30	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
1wdcC	156	40.08	a.39.1.5	17317
1t95A	240	42.75	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2zbtA	297	47.36		
1s6yA	450	50.59	c.2.1.5,d.162.1.2	105314,105315
2vlbA	251	50.91		
2z69A	154	52.32		
2h30A	164	52.56		
1svjA	156	52.70	d.220.1.1	106049
2gmgA	105	52.79		
1t6sA	162	54.06	a.4.5.60,a.4.5.60	112271,112272
1jdlA	121	54.51	a.3.1.1	66557
2i5tA	188	55.75		
1kmkA	406	57.62	c.67.1.3	68696
2o8iA	165	61.47		
2pibA	216	63.33		
1i8oA	114	64.33	a.3.1.1	61979
1t3iA	420	67.48	c.67.1.3	106354
1aua	296	68.65		
1w85B	324	72.20	c.36.1.7,c.48.1.2	114336,114337
1jfuA	186	72.21	c.47.1.10	62940
1xe7A	203	83.23	b.82.1.16	115213
2z99A	219	87.31		
1auaA	296	87.40	a.5.3.1,c.13.1.1	16290,30882
1f9mA	112	89.34	c.47.1.1	32736