# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2scpA	174	22.21	a.39.1.5	17256
1a2xA	159	22.94	a.39.1.5	17251
1em9A	154	23.23	a.73.1.1	18333
1topA	162	23.30	a.39.1.5	17223
1p9qC	256	25.77	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
1avsA	90	26.95	a.39.1.5	17226
2gv5A	161	28.17		
2qacA	146	33.20		
1txoA	237	34.53	d.219.1.1	112781
1auaA	296	36.87	a.5.3.1,c.13.1.1	16290,30882
1aua	296	36.97		
2jfrA	234	44.12		
1wdcC	156	46.12	a.39.1.5	17317
1wdcB	156	46.66	a.39.1.5	17302
1w0hA	204	47.35	c.55.3.5	114064
1jdlA	121	50.56	a.3.1.1	66557
1exrA	148	51.28	a.39.1.5	17299
1ggzA	148	52.07	a.39.1.5	70176
2a19A	175	52.97		
3c85A	183	54.43		
2raqA	97	54.81		
2z69A	154	58.47		
2qalM	117	60.71		
2cm1A	260	61.30		
1t3wA	148	61.53	a.236.1.1	112233
1i8oA	114	61.88	a.3.1.1	61979
2obhA	143	65.11		
2flsA	132	65.97		
2uubR	88	66.27	a.4.8.1	139949
1djqA	729	68.93	c.1.4.1,c.3.1.1,c.4.1.1	28614,30315,30600
1yi8A	351	70.21		
1sedA	117	72.88	a.219.1.1	105449
1ywkA	289	76.61	b.82.1.13	124155
2vqeR	88	79.58		
2phcB	225	80.94		
2gkpA	167	82.57		
1cjcA	460	86.74	c.3.1.1,c.4.1.1	30319,30604
2rghA	571	89.74