# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hpkA 208 0.3102 1wdcB 156 1.157 a.39.1.5 17302 1a2xA 159 2.181 a.39.1.5 17251 1icpA 376 2.284 c.1.4.1 62270 2scpA 174 2.389 a.39.1.5 17256 2gv5A 161 4.196 2c4eA 302 4.214 1p9qC 256 5.491 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2obhA 143 6.288 2q0dA 353 6.845 1wdcC 156 9.028 a.39.1.5 17317 2zbtA 297 10.17 1nq7A 244 11.34 a.123.1.1 92047 2h0rA 216 11.95 4bclA 366 16.64 b.75.1.1 27968 1pg4A 652 17.30 e.23.1.1 88067 2ovkC 159 18.24 2hjhA 354 18.56 1w85B 324 19.42 c.36.1.7,c.48.1.2 114336,114337 4bcl 366 20.01 1uhnA 189 20.22 a.39.1.5 99399 1vb3A 428 20.34 c.79.1.1 119942 3c61A 314 21.41 1y1xA 191 22.77 a.39.1.8 116374 1i8oA 114 23.60 a.3.1.1 61979 2sasA 185 25.63 a.39.1.5 17258 1l5aA 436 26.03 c.43.1.2,c.43.1.2 75923,75924 2fv7A 331 28.13 c.72.1.1 134197 2e7uA 424 29.06 1wy9A 147 30.40 2okjA 504 30.57 2i7aA 174 30.99 2gvhA 288 31.64 d.38.1.1,d.38.1.1 135776,135777 2ct9A 208 34.36 1ep3A 311 35.03 c.1.4.1 28597 2j2fA 363 36.37 1agjA 242 37.82 b.47.1.1 25827 2p3xA 339 39.24 1jdlA 121 40.49 a.3.1.1 66557 1qv1A 195 40.97 a.39.1.5 96347 2fnaA 357 42.26 a.4.5.11,c.37.1.20 133809,133810 1auiB 169 43.21 a.39.1.5 17325 2oqhA 385 46.09 2pgfA 371 46.50 1xocA 520 46.66 c.94.1.1 122201 2djlA 314 47.08 1exrA 148 47.17 a.39.1.5 17299 3c8dA 403 47.47 2o5gA 148 48.04 2oucA 142 49.28 1t95A 240 49.32 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 2raqA 97 49.57 2ap1A 327 49.88 c.55.1.10,c.55.1.10 127108,127109 2gmgA 105 50.32 2pjmA 226 50.38 2z61A 370 51.57 1yc5A 246 53.91 c.31.1.5 122910 2ccmA 191 55.70 2pbeA 294 55.75 2hpsA 186 56.05 2ewfA 610 56.34 1p1mA 406 56.94 b.92.1.4,c.1.9.9 87696,87697 1gp1A 198 57.68 c.47.1.10 33059 2p0kA 212 58.25 1yexA 186 58.58 c.47.1.10 123021 1vptA 348 59.17 c.66.1.25 34207 1ed8A 449 60.40 c.76.1.1 34988 2v1xA 591 62.72 2etxA 209 62.90 2h6eA 344 62.97 2ixmA 303 63.60 a.268.1.1 137776 1ig8A 486 64.24 c.55.1.3,c.55.1.3 64746,64747 2eb0A 307 65.26 1jbkA 195 65.77 c.37.1.20 71631 2ql8A 143 66.10 1xe7A 203 66.18 b.82.1.16 115213 1st9A 143 67.83 c.47.1.10 98987 1gs5A 258 69.42 c.73.1.2 70395 2pefA 373 69.42 1nf2A 268 70.71 c.108.1.10 91849 3d3iA 761 72.29 2rhsA 294 75.54 1sc3A 178 76.50 c.17.1.1 105416 2i1sA 188 78.11 1b0uA 262 78.19 c.37.1.12 32370 2pbkA 228 80.06 2qs7A 144 80.89 1p3wA 404 81.06 c.67.1.3 87752 1q77A 138 81.14 c.26.2.4 96023 1pjrA 724 81.87 c.37.1.19,c.37.1.19 32391,32392 1jfuA 186 83.02 c.47.1.10 62940 1mrgA 263 83.69 d.165.1.1 42183 1gycA 499 83.96 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2i5tA 188 84.16 2qalM 117 85.56 1hskA 326 85.72 d.145.1.2,d.146.1.1 61241,61242 2b1kA 168 86.01 1sffA 426 86.33 c.67.1.4 105482 1tc5A 194 88.15 c.110.1.1 106752 2r11A 306 88.36 1sjiA 350 88.47 2qpxA 376 89.49 1peqA 714 89.65 a.98.1.1,c.7.1.2 104131,104132