# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1p3wA	404	8.092	c.67.1.3	87752
2raqA	97	10.70		
2gmgA	105	19.07		
1wdcB	156	28.96	a.39.1.5	17302
1auaA	296	34.41	a.5.3.1,c.13.1.1	16290,30882
1aua	296	34.66		
1wdcC	156	36.56	a.39.1.5	17317
2o8iA	165	38.74		
1i8oA	114	39.84	a.3.1.1	61979
2h30A	164	39.86		
1xe7A	203	40.52	b.82.1.16	115213
1us5A	314	40.62	c.94.1.1	99856
1iibA	106	41.62	c.44.2.1	32648
1p9qC	256	46.31	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2g2kA	170	46.48		
2zbtA	297	49.11		
1jfuA	186	52.22	c.47.1.10	62940
3ce7A	107	54.25		
1t95A	240	57.27	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1t6sA	162	57.36	a.4.5.60,a.4.5.60	112271,112272
1ep3A	311	57.83	c.1.4.1	28597
1w7jB	151	58.99	a.39.1.5	120690
1jetA	517	59.55	c.94.1.1	35718
1jdlA	121	61.61	a.3.1.1	66557
1yexA	186	68.02	c.47.1.10	123021
2ccmA	191	72.35		
1eexA	554	73.00	c.1.19.3	29650
2qr6A	393	73.04		
1f9mA	112	76.09	c.47.1.1	32736
1q77A	138	76.38	c.26.2.4	96023
2scpA	174	78.69	a.39.1.5	17256
1ah7	245	80.09		
2p3xA	339	82.97		
2oucA	142	85.10		
1ufoA	238	88.91	c.69.1.27	99344
2pefA	373	89.58