# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i7hA	189	6.043		
2o3oA	254	15.18		
3bm1A	183	16.97		
1trb	320	17.21		
2cvjA	180	18.26		
180lA	164	21.82	d.2.1.3	36867
1jfuA	186	25.01	c.47.1.10	62940
1wouA	123	25.41	c.47.1.16	109471
2ywlA	180	27.49		
1oohA	126	27.94	a.39.2.1	93383
1f9mA	112	35.77	c.47.1.1	32736
2fnaA	357	37.01	a.4.5.11,c.37.1.20	133809,133810
1knmA	130	37.49	b.42.2.1	72781
2z69A	154	42.97		
1cjcA	460	43.42	c.3.1.1,c.4.1.1	30319,30604
2p3xA	339	45.62		
104lA	166	45.83	d.2.1.3	36969
2raqA	97	46.32		
2a7oA	112	51.59		
1q1aA	289	52.51	c.31.1.5	95561
2qacA	146	66.19		
2flsA	132	66.48		
1w0hA	204	72.11	c.55.3.5	114064
2scpA	174	74.74	a.39.1.5	17256
174lA	164	79.16	d.2.1.3	36956
2nteA	210	82.32		
1knyA	253	87.04	a.24.16.1,d.218.1.1	75896,75897
1hqvA	191	87.86	a.39.1.8	61160
1l0bA	229	89.04	c.15.1.3,c.15.1.3	73391,73392