# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wouA	123	8.821	c.47.1.16	109471
2raqA	97	9.671		
1f9mA	112	14.22	c.47.1.1	32736
1wdcC	156	14.91	a.39.1.5	17317
1oohA	126	15.96	a.39.2.1	93383
2i7hA	189	18.44		
2hiyA	183	22.42		
2ysrA	105	23.14		
1rqbA	539	39.73	a.5.7.2,c.1.10.5	105057,105058
2depA	356	41.11		
1wdcB	156	41.56	a.39.1.5	17302
180lA	164	43.54	d.2.1.3	36867
3c85A	183	44.95		
1p9qC	256	45.34	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
104lA	166	45.35	d.2.1.3	36969
1knyA	253	47.45	a.24.16.1,d.218.1.1	75896,75897
2gmgA	105	47.48		
2g2kA	170	47.74		
1jdlA	121	51.06	a.3.1.1	66557
1auaA	296	51.21	a.5.3.1,c.13.1.1	16290,30882
1i8oA	114	51.70	a.3.1.1	61979
2p3xA	339	54.43		
3bjhA	119	55.94		
1s2xA	206	57.68	a.47.3.1	105229
2iyvA	184	58.27	c.37.1.2	137812
2qxlA	658	59.33		
1w0hA	204	61.26	c.55.3.5	114064
1jetA	517	61.49	c.94.1.1	35718
2qacA	146	62.61		
3canA	182	63.09		
1jfuA	186	63.28	c.47.1.10	62940
1aua	296	66.72		
1t6sA	162	69.65	a.4.5.60,a.4.5.60	112271,112272
2gv5A	161	73.81		
1s1hC	192	74.34	i.1.1.1	105156
1em9A	154	81.01	a.73.1.1	18333
1eexA	554	84.83	c.1.19.3	29650
2g3mA	693	89.13