# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1wdcB 156 3.944 a.39.1.5 17302 1b43A 340 4.454 a.60.7.1,c.120.1.2 18092,33362 1cuk 203 5.099 2j5bA 348 5.213 1cukA 203 6.008 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2o5gA 148 6.520 2obhA 143 6.907 2a1vA 144 7.047 d.198.3.1 126019 3c18A 290 9.407 1vyrA 364 9.456 c.1.4.1 108906 2h0uA 217 10.08 2f3yA 148 12.88 2g7uA 257 13.20 2gv5A 161 14.71 2bl0B 145 16.04 1ggzA 148 17.67 a.39.1.5 70176 1f7cA 231 18.45 a.116.1.1 19107 2q4uA 272 19.44 2an9A 207 21.89 c.37.1.1 127037 2r8rA 228 22.95 1r8sA 164 24.52 c.37.1.8 97247 2ao9A 155 26.16 a.4.1.17 127069 2ef8A 84 26.34 1gky 187 27.32 2f4qA 346 27.87 1fseA 74 28.10 a.4.6.2 60000 1u20A 212 28.18 d.113.1.1 119463 1znwA 207 28.72 c.37.1.1 125412 2r2iA 198 30.45 1ex7A 186 30.65 c.37.1.1 59537 1a2xA 159 31.03 a.39.1.5 17251 1kk8B 139 31.04 a.39.1.5 77430 1rwyA 109 31.52 a.39.1.4 98002 1xppA 115 33.28 d.74.3.2 115768 2hjqA 111 36.63 1kaoA 167 37.40 c.37.1.8 32014 1topA 162 37.73 a.39.1.5 17223 1noxA 205 38.33 d.90.1.1 40242 2nteA 210 38.90 5palA 109 39.36 a.39.1.4 17215 2fh5B 214 40.10 c.37.1.8 133478 2b5aA 77 40.62 a.35.1.3 127882 2a8sA 212 41.14 d.113.1.1 126416 2qacA 146 42.91 1je8A 82 45.26 a.4.6.2 77108 1kjwA 295 46.02 b.34.2.1,c.37.1.1 68643,68644 1ehwA 162 47.02 d.58.6.1 39088 1i6lA 328 47.42 c.26.1.1 66041 2p5sA 199 49.26 2a19A 175 50.07 2etxA 209 51.02 1s1eA 224 51.66 a.39.1.5 112007 2qolA 376 52.25 1nh1A 330 55.12 e.45.1.1 91871 1lucB 324 55.30 c.1.16.1 29548 4cpvA 108 56.03 a.39.1.4 17198 1eexA 554 56.30 c.1.19.3 29650 3d5lA 221 56.99 1auiB 169 57.76 a.39.1.5 17325 1rroA 108 57.80 a.39.1.4 17195 2ce2X 166 59.90 1b0nA 111 60.16 a.34.1.1,a.35.1.3 17001,17064 1pvaA 110 62.42 a.39.1.4 17207 2chgA 226 62.91 2abk 211 64.14 1k3sA 113 64.65 d.198.1.1 68120 1jdlA 121 64.91 a.3.1.1 66557 2anxA 146 65.85 2q22A 139 66.08 1zavA 180 68.24 1zljA 78 68.66 2g0qA 173 68.83 1zybA 232 69.79 a.4.5.4,b.82.3.2 125815,125816 1u7kA 131 69.99 a.73.1.1 113087 2zhgA 154 70.22 1bouA 139 70.39 a.88.1.1 18521 2dxcB 157 71.55 1icpA 376 72.57 c.1.4.1 62270 1yioA 208 72.86 a.4.6.2,c.23.1.1 123326,123327 3cloA 258 75.00 1exrA 148 76.98 a.39.1.5 17299 2a19B 284 77.43 2erxA 172 78.32 c.37.1.8 132304 2zfdA 226 79.12 2o7aA 124 79.29 1ornA 226 80.50 a.96.1.1 87342 1nox 205 83.75 2pbrA 195 84.03 1uc7A 125 85.33 c.47.1.1 99163 1h72C 296 86.60 d.14.1.5,d.58.26.1 60712,60713 2scpA 174 86.70 a.39.1.5 17256 2abkA 211 87.07 a.96.1.1 18743 1bedA 181 88.17 c.47.1.13 90330 2ja9A 175 89.04 1tifA 78 89.09 d.15.8.1 37836