(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0465 yqbN, Bacillus subtilis, 157 residues
                     10            20            30             40     
                     |             |             |              |     
   1 ...M..S.ENQNEKV.Y..DL..SFFMPGQTID..AEEVEVP..IS..KRF.VD..KEGN.VV.P
   2 ...M..S.EKQEEKV.Y..DL..SFFMPGQTVE..AEEIKVP..IS..KRF.VD..KKGN.VI.P
   3 ...M..S.ENQNEKV.Y..DL..SFFMPGQTID..AEEVEVP..IS..KRF.VD..KEGN.VV.P
   4 ...M..S.EKN-ENV.Y..DL..SFFMPGKTIE..AEEIKVP..IS..KRF.VD..KKGN.VI.P
   5 ...-..-.-MSEKQT.F..DL..SFFMPGQTVE..AEEVKVP..IS..KRF.VD..KKGN.VI.P
   6 ...-..-.------M.S..NL..SAFLSQNAIK..VDNVKYV..AS..NRF.LD..KEGK.PV.E
   7 ...-..-.------M.S..NL..SAFLSQNAIK..VDNVKYI..AS..DRF.LD..EEGK.PV.E
   8 ...-..-.------M.S..NL..TAFFAHNKKQ..NENIKHA..IS..KKF.VD..EQGN.PI.E
   9 ...-..-.------M.G..DL..NAFLSQNAIK..VENRKYV..AS..ERF.IG..EDGK.AI.E
  10 ...-..-.------M.S..NL..TAFFAHNKKQ..NENIKHA..IS..KKF.VD..EQGH.PI.E
  11 ...-..-.------M.G..DL..NAFLSQNAIK..VENRKYV..AS..NRF.IN..EEGK.AI.E
  12 ...-..-.------MsG..GL..QAFFAQEAGE..AITEKVV..VS..DRF.KD..KDGK.PV.P
  13 ...-..-.------M.N..NF..EDFLMDSFEE..VEEIE--..--..-RE.IT..IGGK.KK.K
  14 ...-..-.------M.N..NF..EDFLMDSFEE..VEEIE--..--..-RE.IT..IGGK.KK.K
  15 ...-..-.------M.N..NF..EDFLMDSFEE..VEEIE--..--..-RE.IT..IGGK.KK.K
  16 ...-..-.------M.N..NF..EDFLMDSFEE..VEEIE--..--..-RE.IT..IGGK.KK.K
  17 ...-..-.----MKMaG..GL..SAFLAQNAVK..PENIRFA..AS..RRF.VD..EDGK.PM.L
  18 ...-..-.------M.S..NF..NRFMKQNKVQ..KENTTYP..AT..KSL.TD..EKGN.PL.L
  19 ...-..-.------M.S..DL..SLFYAQNAEA..GIMEEFA..VS..NRF.KT..KDGK.PV.L
  20 ...-..-.-------.M..SL..QLFMKKNKKV..KENVFYA..PT..KSL.LD..ENGL.PL.N
  21 ...-..-.------M.S..QF..EDFLIDSFED..VEEVE--..--..-KE.LE..IGGR.KR.K
  22 iekV..E.ESNEELV.Y..DI..TAFLPGKHEE..KVKLERA..VS..NRF.KD..KNGN.VI.K
  23 ...-..-.------M.S..DL..QDFLMDNFEE..AEPIE--..--..-RR.VS..LGGK.EK.I
  24 ...-..-.-MDIEKM.Q..NM..SE---DDVIDalLGEIEVP..TR..TVV.IQ..RLG-.-I.P
  25 ...-..-.-MDIEKM.Q..NM..SE---DDIIDalLGEIEVP..TR..TVV.IQ..RLG-.-I.P
  26 ...-..-.------M.N..NF..EDFLMDSFED..TQEIE--..--..-RE.VT..IGGK.KK.L
  27 ...M..K.KMTDEQI.L..SMkeEDILA---KL..MGTYEVP..TA..TVF.IE..RMG-.-I.P
  28 ...-..-.-------.-..--..---MAESVEDflFENVGSP..VE..EKE.VK..LERF.KS.P
  29 ...-..-.------M.SlgSL..EAFLNP--VK..VENKKVI..VS..NRF.KD..KDGN.LV.P
  30 ...-..-.-------.-..--..---MAESVEDflFENVGSP..VE..EKE.IK..LERF.KS.P
  31 ...-..-.-------.-..--..---MAESVEDflFENVGSP..VE..EKE.VK..LERF.KS.P
  32 ...-..-.-------.M..NL..QEFLNNHPVD..NLTEEII..VS..PRF.KD..ADGL.PL.K
  33 pynF..E.KMEEKRMgI..DM..KAFMKPELKD..RGTMEFP..GI..ERY.KD..AKGN.VI.P
  34 ...MsnE.KIKDEEI.L..NMteEDIIN---RL..MEPDEVP..EA..TYF.IE..RLR-.-I.P
  35 ...M..N.ENGLSKN.I..NIv.DLLLNADTEN..LERPSTI..VEl.KRL.ST..IFGQ.EF.K
  36 ...M..K.KNEKDEV.L..AMkeEDILA---KL..LETHDVP..TA..NIQ.VP..RLG-.-I.A
  37 ...M..S.ENGLLKN.I..NIv.DLLLNADTEN..LERPSTI..VEl.KRL.ST..IFGQ.EF.K
  38 ...M..NtENNVLEM.Q..E-..EDIIK---KL..LGEVEVP..KA..VVV.IE..RIG-.-I.P
  39 i..L..EeELTEEEM.I..EMseDDIIN---KL..LEPSDAP..ER..TYA.IE..RLG-.-I.Q
  40 ...-..-.-------.M..AI..SDFLLENVQQ..EETKEVH..L-..KRF.KS..----.--.P
  41 keiV..D.KKEATEV.K..NI..VELLLK--MD..AGKIKMPsmTY..KIF.CK..KVGI.EL.P
  42 ...-..-.------M.N..TV..EKLLALDAGR..LEMPNKE..VT..LKL.GK..LGGA.KV.T
  43 ...-..-.------M.N..TV..EKLLN---MD..AGKLKMP..SStfELY.CK..KLDD.TL.E
  44 ...-..-.------M.N..TV..EKLLN---MD..AGKLKMP..SSifELY.CK..KLDD.IL.E
  45 ...M..A.VKN--KF.V..SL..EDVLGKNAEE..L--TAVT..LG..EID.AK..KLGG.KL.P
  46 ...M..A.KKPVIKK.L..TL..NDLM-QQREK..YEVKQDT..KE..EVL.LR..RGDD.QV.T
  47 ...-..-.-------.M..NLv.EQLLK---ID..AGKIEVP..SK..EVK.LKlaKLGNmEI.T
  48 aeeM..V.KVTKENE.L..DLv.QGLL--EAAD..FRNDDDL..QT..EIQ.IK..RNDK.VFfK
  49 ...-..-.------M.D..TL..ELLLKGERPN..MPEKEIK..L-..KRL.SK..ACGG.DI.I
  50 ...-..-.-------.-..EM..D--LITGLLK..AAEYKTE..VQ..QPLnIT..RNGQ.TLfK
  51 ...-..-.------MqL..TI..ENLLESKGII..EGETGVK..TT..NLG.IK..RLGG.EI.-
  52 ...-..-.-MNSTPK.S..AL..SEF-SRRAIQ..RLQAKKI..PK..KQI.LH..IPSL.EA.D
  53 ...-..-.-------.-..--..----------..-------..--..---.--..----.--.-


           50        60                  70                  80        
           |         |                   |                   |        
   1 FIFKAITTDRIDELEKENTT.YKNV....KG.....RG....R.....VKE.LDSQRFYARIAVE
   2 FVFKPITTERIDELEKENTT.YKNI....KG.....RG....R.....VKD.LDTQRFYARIAIE
   3 FIFKAITTDRIDELEKENTT.YKNV....KG.....RG....R.....VKE.LDSQRFYARIAVE
   4 FILKPITTERIDELEKENTT.FKNV....KS.....RG....R.....VKD.LDSQRFYARIAIE
   5 FVFKAITTERIDELEKENTT.FKNV....KG.....RG....R.....VKD.LDSQRFYARIAIE
   6 WELKVLSSEEDEALRRKCTK.RVKV....IGnn6htGQ....Y.....TSE.IDYNSYVAELCVA
   7 WELKVLSSEEDEVLRRNCTK.RVKV....IGnn6ptGQ....F.....TSE.IDYNSYVAELCVA
   8 WEFAPISPERDEELKSESTK.RSMImqgkRK.....GQ....Y.....NTD.FDHFKYQRLLTIE
   9 WELKAIDSDRDRQLRKDSTI.RVPVlnk.KGkat..GQ....Y.....TSE.TDFNTYTLKLCVE
  10 WEFAPISPERDEELKSESTK.RSMImqgkRK.....GQ....Y.....NTD.FDHFKYQRLLTVE
  11 WEIRALSSEEDAAIRKNCPK.REPIlnk.KGkht..GQ....Y.....NTV.TDYNKYYEELSIA
  12 WEIRSMTEAENEEIRKSATR.KVKS....KN.....GM....Y.....TTE.TNNELYLAKLAVA
  13 LKFKPISADKGDELRKKCKK.ITIV....KG.....QK....M.....-SE.TDQDKFIANQIIE
  14 MKFKPISADKGDELRKKCKK.ITIV....KG.....QK....M.....-SE.TDQDKFIANQIIE
  15 MKFKPISADKGDELRKKCKK.VKLV....KG.....QK....M.....I-E.TDQDKFVSNQIIE
  16 MKFKPISADKGDELRKKCKK.VKLV....KG.....QK....M.....I-E.TDQDKFVSNQIIE
  17 WELRPLMSEEDEALRRRFTR.MVQVpg..KS.....SQ....F.....RQE.FDSNGYLAAMAAG
  18 WSIKPLTTRENDAIREDCTM.DVPVtg..KP.....NM....F.....RPK.VNTSKYIAKMICA
  19 WKIRCMTEAENEEHRKAATK.KVKA....KN.....GT....Y.....LSE.TNSDLYLAKLAVG
  20 WEFRHVSTKEDEDIRESCTM.DVQItg..KP.....GA....Y.....RKK.IDTNAYIAKLVAA
  21 MRFKAIGATRADEIRRDCRN.VKFI....KS.....QK....I.....V-E.TDQDKYLEKVIVE
  22 FVFENVTSERLEELRKDCTKrIPKG....RG.....RQ....P.....EEK.FDSDKFQALLALE
  23 MKFKPISAATGDEIRRSCRK.TTFH....KG.....QR....L.....V-E.TDQDAFVAKLIIE
  24 IKLKALTGKQISKIRKDNTH.SEKV....KG.....SK....L.....EKDvFDDENFNAEIIEK
  25 IKLKALTGKQISKIRKDNTH.SEKV....KG.....SK....L.....EKDvFDDENFNADIIEK
  26 MRFRPISAEMGDMIRKRNRK.TKLI....KG.....QR....I.....M-E.TDQDKYVSDLIIE
  27 LTLKGLSEKEISKIRKECTY.NRKS....RG.....GK....S.....EDK.LDGNEFDAGLIVA
  28 FKIKSLTADEVSHIRKQATK.RVLNr...KT.....HR....Y.....EQE.TDENQFQGLVVAE
  29 FEIRPITQEENKMLIKKYTK.RDK-....KG.....QE....Y.....---.FDRAEYISELTAS
  30 FKIKSLTADEVSELRKQATK.RVLNr...KT.....HK....Y.....EQD.TDENQFQDLVVAE
  31 FKIKSLTADEVSDLRKQATK.RVLNr...KT.....HK....Y.....EQE.TDENQFQDLVVAE
  32 FTIKAMTSQEFEEIRKSATE.IR--....KG.....RK....V.....--E.FDAQKFNLRAVIN
  33 FIIKRLSMKEIKEIRNNYKT.KEVY....RD.....KR....Ng14avIND.YDGDSAGLEIMVE
  34 VTLKGLSEKEINKIKRQCTY.TRKE....RG.....-K....R.....IKE.LDDEEFNAALIEA
  35 VMCRALTISKDEEIQNTCLK.I---....-D.....EN....M.....KTD.IDLPEMQMLTIIE
  36 IDLKGLTEKEISGIREECTT.RRKI....-N.....GK....I.....ETK.LNNADFDAALIIG
  37 VMCRALTISKDEEIQNTCLK.I---....-D.....EN....M.....KTD.IDLPEMQMLTIIE
  38 VELKGLNTVEIKKIREKCTS.KRKI....KG.....-V....A.....EEK.LNGEEYDAALIIG
  39 VTLKGLSEREIQRIRKECTV.ERKH....RG.....NR....-.....TKE.LNEEEFNAALIES
  40 FVIRSIDESLNDTLKKRATI.KKKN....RQ.....GV....A.....IPE.FNNDKYIDSLMSA
  41 FECTALEPETFDELQSSGLK.IE--....--.....NG....S.....LKD.LDNFKMKTNIILA
  42 FLCKAVSPEKMAKIQDN--L.IEIS....KK.....GN....-.....IQG.TNMGKNKVLTVME
  43 IECKAIDPERFDEIRMNSMD.V---....-N.....SG....D.....VEN.INIYELKVNTILE
  44 IECNAIDPERFDEIRMNSMD.V---....-D.....SG....N.....LEN.INVYELKVNTILE
  45 V--ASFDNKEFSQIKKDCTT.YVKSg...KN.....GR....M.....LPE.IDEDKLMVEVIVA
  46 ITIK----KPTRSLCLEC--.ITLS....QD.....EN....R.....QEQ.AD-----INMVYN
  47 FKCNAISMERYNEIQERVLQ.VDK-....KG.....N-....-.....IQG.FATAQAKIETVLA
  48 FKVRPLSEEELVKARRNAVV.KMPN....PS.....NPklppI.....EKD.LRVEEFTAWKIYY
  49 FRLRALSFNRVAEIKNSHA-.----....-G.....GD....M.....E--.-------VHILLA
  50 FNVRPLSFDEIAQCRKKATT.YMAN....PG.....GA....Slplv.EKE.VSTADYMAWKIYT
  51 -TIQSLDPKKLEQILKEAN-.----....-S.....GK....S.....TLE.LN-----KKIIYM
  52 ITIRSLSYEEI----VECTN.IDDS....AD.....KN....R.....---.--SDKYC---IYL
  53 --------------------.----....--.....--....-.....---.-MVVQAFTHLIYE


      90                100                   110              120     
      |                  |                     |                |     
   1 TT...VYPT....FKA..KELR.....EA.YK.....TE.DPVEV.AKRV....LS..VGGEYAN
   2 ST...IYPD....FRS..KELR.....EA.YK.....TA.DPVEV.AKRV....LS..VGGEYAN
   3 TT...VYPT....FKA..KELR.....EA.YK.....TE.DPVEV.AKRV....LS..VGGEYAN
   4 ST...IYPD....FRS..KDLR.....EA.YK.....TA.DPVEV.AKRV....LS..VGGEYAN
   5 ST...IYPD....FRS..KELR.....EA.YS.....TQ.DPVEV.AKRV....LS..VGGEYAN
   6 ST...VFPD....LKD..AELQ.....NS.YG.....VM.GEAQL.LKTM....L-..TAGEYVN
   7 ST...VFPD....LKD..AELQ.....NS.YG.....VM.GEAQL.LKTM....L-..TAGEYVN
   8 SI...VYPN....LND..KELQ.....DS.YG.....VM.GADAL.LGKM....LT..I-GEIAD
   9 TV...VFPD....LHD..AELQ.....NS.YG.....VM.GAEEL.LTTM....L-..TPGEYTD
  10 SI...VYPN....LND..KELQ.....DS.YN.....VM.GADAL.LGKM....LT..I-GEIAD
  11 CT...VFPD....LND..SMLQ.....DS.YR.....VM.GANQL.LKAM....L-..TPGEYTE
  12 SV...VFPD....LKN..VELQ.....QS.YG.....TL.GAENL.LRRM....L-..LPGEYAN
  13 TT...VYPD....LKN..AELQ.....KA.WG.....VM.GAEQL.LKAM....KSkmSDGEYMG
  14 TT...VYPD....LKN..AELQ.....KA.WG.....VM.GAEQL.LKAM....KSkmSDGEYME
  15 TT...IHPD....LKN..SELQ.....KA.WG.....VM.GAEEL.LNAM....KSrmTDGEYAD
  16 TT...IYPD....LKN..SELQ.....KA.WG.....VI.GAEEL.LSAM....KSrmTDGEYAD
  17 CT...VFPN....LND..KGLQ.....DS.YG.....VM.GAEAL.LKAM....L-..TSGESAN
  18 AV...IEPN....LND..KELQ.....DS.YG.....VM.TPEEL.LKEM....VD..DPGEYGD
  19 SV...VYPD....LKD..AELQ.....KS.YG.....TL.GAENL.LRVM....L-..LPGEYAA
  20 SC...VVPN....LNN..AELQ.....DS.YG.....VK.KPEDL.LKEL....VD..DPGEYQD
  21 TT...VYPD....LKN..AELQ.....SN.WG.....VM.GAVEL.LQAM....KSkmTDGEYSS
  22 ST...VYPK....FSS..KELL.....NA.YK.....SP.SALEV.AKKV....LS..VPGDYMN
  23 TT...TVPD....FKS..QELQ.....QS.WG.....VL.GAENL.LKAM....KTkmKDGEYAT
  24 AT...VSPN....WNN..EKLK.....AA.LN.....VS.NGKEV.IKRR....L-..LAGEMDN
  25 AT...VSPN....WNN..EKLK.....AA.LS.....VS.NGKEV.IKRR....L-..LAGEMDD
  26 TT...TCPD....LKN..SELQ.....AS.WG.....VL.GAEEL.LSAM....KSkmRDGEFSD
  27 AT...TNFN....WND..SKLL.....DS.AK.....AS.DGKQF.IRKK....L-..LAGEISA
  28 AV...VSPN....LNN..EKLQ.....TS.WG.....CIaKPEEV.LKKM....LK..V-GEYTE
  29 AV...VFPD....LTN..AELQ.....KA.YG.....VL.GASAL.LQKM....LY..V-GEYAE
  30 AV...VSPN....LNN..EELQ.....TS.WG.....CIaKPEKV.LKKM....LK..V-GEYTE
  31 AV...VSPN....LNN..EKLQ.....TS.WG.....CIaKPEEV.LKKM....LK..V-GEYTE
  32 HT...IVPD....FKD..AASI.....QK.LG.....CR.TADEY.VQKV....L-..LAGEMST
  33 AF...VQPK....LDD..PELM.....EY.YG.....VH.DRLDM.PNII....FP..DKDDFKY
  34 AT...VTPN....WND..ERLL.....DA.LK.....AS.DGKQV.IRKK....F-..LAGETSA
  35 GV...CDLDgkllFKN..KELM.....DK.FK.....AP.TPKEL.ARKL....L-..LPGEITN
  36 AT...TNFN....WNN..PKLI.....EP.LK.....LS.DGKAY.IRKK....L-..LAGEISF
  37 GV...CDLDgkllFKN..KELM.....DK.FK.....AP.TPKEL.ARKL....L-..LPGEITN
  38 AT...TNFD....WNN..PKLL.....EK.YS.....LS.DGKQF.ILRK....L-..LAGERTN
  39 AT...IKPN....WSD..KRLL.....SS.LS.....LS.SGREV.IKRR....L-..LAGEMVA
  40 CV...VTPD....LKD..AQLQ.....ES.YR.....TV.GDEAAtLKAM....LK..I-GEYAT
  41 SC...--KT....FKD..KELL.....KH.FK.....SP.TPREL.LRKM....L-..LAGEIND
  42 GC...-SDT....FRN..KDLL.....EH.FN.....AP.TPKEL.INKL....L-..LAGEIDE
  43 SC...--PI....FSN..MELV.....KK.FS.....AI.TPKEL.VKKL....L-..LSGEIDK
  44 SC...--PM....FRN..MEVV.....EN.LG.....LA.TPKDL.LKKL....L-..LAGEIDN
  45 AVhndTRSDft..FRN..PQLL.....EK.LG.....VI.SAAEA.AGIL....LS..-PGEIQR
  46 IV...VEPN....LKD..TNLH.....KA.YG.....CI.EPIEI.VEKI....FE..T-GEIAQ
  47 GV...--PE....LRS..EELM.....KH.FK.....AP.TPKEL.MNKI....F-..LPGEVDI
  48 AT...VDKEev..WDN..PSVMkgleaKG.FP.....VL.RGIDV.INTV....L-..RAGEKDA
  49 GV...ISPD....LKS..EDLK.....QK.YN.....AV.TPLEM.IKTM....L-..LPGEIED
  50 AT...VATDgkkfWDN..SALK.....EG.LKkaghmVM.TQNEI.IKEV....L-..TAGELEA
  51 SV...IDPN....LKD..NELL.....KG.YG.....CKnNPYEI.VEKI....FT..IT-EIGI
  52 SV...VSPD....LKQaaKEIM.....ESeSG.....LPaDQRSL.LEPLdivdLF..DMGEVTE
  53 CC...--PM....LQN..ADLQ.....KG.LN.....VL.DPYDT.VPKL....FE..L-GEIMK


        130            140           150          
         |              |             |          
   1 WLNKAIEING.F..DD..DLEDL...EEA.AKNLEHHHHHH...
   2 WLNKAIEING.F..ED..DLEDL...EEE.AKN--------...
   3 WLNKAIEING.F..DD..DLEDL...EEA.AKN--------...
   4 WLNKAIEING.F..ED..DLEDL...EEE.GKKLVKDGDKEavy
   5 WLNKAIEING.F..ED..EIEDL...EEA.AKN--------...
   6 YTVKVNEVNG.F..DT..SFEDK...VEE.AKN--------...
   7 YTVKVNEVNG.F..DT..TFEDK...VEE.AKN--------...
   8 ASAVAQEVNG.Y..QA..ELEDM...VEE.IKN--------...
   9 LSSEVGEVNG.F..DR..TFEDK...VEE.AKN--------...
  10 ASAVAQEVNG.Y..QA..ELEDM...VEE.IKN--------...
  11 YVQEVLDING.F..DN..SFEDK...VEE.AKN--------...
  12 LIEKVQEING.F..DK..DIEDL...KEE.IKN--------...
  13 WGSVVSEING.Y..DK..GIQEL...VEE.AKN--------...
  14 WGSVVSEING.Y..DK..GIQEL...VEE.GKN--------...
  15 WSSTVIEING.Y..DK..GIQEL...VEE.AKN--------...
  16 WSSTVIEING.Y..DK..GMQEL...VEE.AKN--------...
  17 YFQKAQEVCG.F..-T..PIEEL...TEQ.AKN--------...
  18 FANFVQQFNG.F..TT..TMDDK...VEE.AKN--------...
  19 LIEKVQQING.F..DK..DLNEL...KEE.VKN--------...
  20 LFVFIQKYNG.F..DT..SMEEE...VEE.AKN--------...
  21 WSNVVSEING.Y..DK..ELQEL...IEE.AKN--------...
  22 WISAASEANG.F..DD..EIDDEaesIEL.AKN--------...
  23 FSNIVSEVNG.Y..DK..SMNDL...VEE.AKN--------...
  24 LIEQVFDLSG.Y..ND..EAED-...IEE.IKNSLEPDTDSi..
  25 LINKIFDLSG.Y..ND..EAED-...IED.IKNSSGLDTNFi..
  26 WSSIVGEVNG.Y..DK..SVNDL...IEE.AKN--------...
  27 LTDKILELSG.F..NN..ELEEM...-ED.IKNS-------...
  28 LSQAIMDLSG.LndDD..SSEDL...VEE.AKN--------...
  29 LAQAVQELSG.L..DT..DINED...IEE.VKNA-------...
  30 LSQAIMDLSG.LndDD..SSEDL...VEE.AKN--------...
  31 LSQAIMDLSG.LndDD..SSEDL...VEE.AKN--------...
  32 IVSKIQELSG.F..DV..GMNEL...IDE.AKN--------...
  33 ADDCLMEACG.LasKK..NDKET...VEE.IKKMMSGEGDDens
  34 MGDKVLELSG.F..DN..ELEE-...IED.IKN--------...
  35 LYRILQDVMG.Y..GK..NA--V...IEE.VKN--------...
  36 LANKVLELSG.F..ND..ELEEK...-ED.IKN--------...
  37 LYRILQDVMG.Y..GK..NA--V...IEE.VKN--------...
  38 LVNKVLDLSG.Y..ND..ELSDA...-ED.IKNLSGEEE--...
  39 LGDKVMELSG.F..DN..EL---...-EE.IKN--------...
  40 LMQEIQSLNG.F..DE..DINDL...VEE.SKKRLEDGDAElsy
  41 LYNKICELNG.Y..SE..SNSEKdkrIEEkIKN--------...
  42 LYNTINELNG.Y..EQ..D-EEE...EEE.IKNL-------...
  43 LYEEVNKVNG.I..DA..EGDKKrq.KER.AKDIKN-----...
  44 LYEEVNKVNG.I..DA..EGDKKrq.KER.AKDIKN-----...
  45 GAMEVQEISG.F..NT..GAEEEr..AEE.VKNS-------...
  46 ISGYGMELAG.Y..GN..EMK-A...IKD.IKN--------...
  47 LADTVTEISG.V..ES..TNQK-...-ED.IKNS-------...
  48 IDDQIDKISG.Fy.DS..EISE-...EEY.AKN--------...
  49 ISREIEKLSG.Y..RV..T---T...VEE.VKKK-------...
  50 VSDAIDNLSG.-..-G..GVS-V...VDY.AKN--------...
  51 IADKIAKLNG.L..DDvkNLEDF...VVE.IKN--------...
  52 IAMKVMELSGvL..NN..RKVTV...VEQ.LKN--------...
  53 IGNQLSDLIG.L..NA..-VSDT...V--.-KN--------...