# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pibA	216	15.85		
1sxjC	340	17.12	a.80.1.1,c.37.1.20	106085,106086
1br1B	150	23.80	a.39.1.5	17309
2ovkC	159	27.55		
1rypC	244	29.17	d.153.1.4	41934
1w7jB	151	34.53	a.39.1.5	120690
2raqA	97	37.64		
2o8iA	165	39.66		
1izoA	417	39.70	a.104.1.1	83851
1f0nA	285	43.62	c.69.1.3	34636
1wdcC	156	45.70	a.39.1.5	17317
1st9A	143	50.63	c.47.1.10	98987
1svjA	156	52.01	d.220.1.1	106049
2z69A	154	57.45		
2fywA	267	58.24	c.135.1.1	134408
1pv1A	299	59.70	c.69.1.34	111639
1q77A	138	60.97	c.26.2.4	96023
2zbtA	297	66.23		
1tkeA	224	68.18	d.15.10.1,d.67.1.1	112470,112471
1zrnA	232	69.15	c.108.1.1	43323
1gdvA	85	70.70	a.3.1.1	60458
1t95A	240	71.93	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2gv5A	161	73.92		
1giqA	413	78.29	d.166.1.1,d.166.1.1	76224,76225
2fnaA	357	78.32	a.4.5.11,c.37.1.20	133809,133810
2zfdA	226	78.65		
2yxtA	312	83.06		
2qacA	146	84.72		
1njgA	250	89.93	c.37.1.20	85785