# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1f0nA	285	14.76	c.69.1.3	34636
2ovkC	159	20.73		
1svjA	156	21.90	d.220.1.1	106049
2zfdA	226	22.30		
1sxjC	340	23.35	a.80.1.1,c.37.1.20	106085,106086
2pibA	216	25.87		
1t95A	240	28.63	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1izoA	417	30.99	a.104.1.1	83851
1st9A	143	31.28	c.47.1.10	98987
1a53	247	31.49		
1p9qC	256	33.21	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2z69A	154	41.67		
2o5gA	148	43.07		
1giqA	413	45.48	d.166.1.1,d.166.1.1	76224,76225
2qacA	146	46.18		
2raqA	97	48.39		
1ggzA	148	50.55	a.39.1.5	70176
2ccmA	191	53.09		
2o8iA	165	54.52		
2qeeA	437	62.04		
1njgA	250	62.92	c.37.1.20	85785
1pv1A	299	64.02	c.69.1.34	111639
2hjhA	354	66.55		
2fnaA	357	66.62	a.4.5.11,c.37.1.20	133809,133810
1gdvA	85	66.87	a.3.1.1	60458
1rypC	244	67.76	d.153.1.4	41934
1wdcC	156	70.65	a.39.1.5	17317
2obhA	143	71.05		
1br1B	150	73.01	a.39.1.5	17309
2bwbA	46	73.67	a.5.2.1	129329
1w7jB	151	73.85	a.39.1.5	120690
2p5qA	170	75.79		
2gv5A	161	76.46		
1xuvA	178	78.13	d.129.3.5	116069
1uddA	226	80.56	a.132.1.3	107776
2z61A	370	82.41		
1ex7A	186	83.53	c.37.1.1	59537
2ebbA	101	85.20		
2a9kB	223	85.92	d.166.1.1	126443
2yxtA	312	89.52