# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2obhA 143 2.102 1f0nA 285 3.041 c.69.1.3 34636 1izoA 417 3.620 a.104.1.1 83851 2ovkC 159 4.059 1icpA 376 4.502 c.1.4.1 62270 2gv5A 161 4.842 3c61A 314 5.486 2fnaA 357 5.824 a.4.5.11,c.37.1.20 133809,133810 2z61A 370 6.686 1wr8A 231 8.659 c.108.1.10 114836 2ct9A 208 9.128 1wdcC 156 9.401 a.39.1.5 17317 1y1xA 191 10.01 a.39.1.8 116374 1wdcB 156 10.03 a.39.1.5 17302 2hpkA 208 10.38 2o5gA 148 11.86 1p9qC 256 13.34 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2v3vA 723 13.95 1w7lA 422 14.61 c.67.1.1 109226 2hjhA 354 16.41 1j09A 468 16.67 a.97.1.1,c.26.1.1 77025,77026 1ep3A 311 16.98 c.1.4.1 28597 2pibA 216 17.26 2zbtA 297 18.53 1mvwC 147 19.07 i.15.1.1 79525 2h6eA 344 19.32 1sxjA 511 19.43 a.80.1.1,c.37.1.20 106081,106082 2z69A 154 19.90 1a2xA 159 20.05 a.39.1.5 17251 2qeeA 437 20.86 1vloA 381 21.46 b.44.2.1,d.250.1.1 108838,108839 1qhlA 227 22.20 c.37.1.12 32382 1ig8A 486 23.10 c.55.1.3,c.55.1.3 64746,64747 1tp9A 162 23.91 c.47.1.10 119306 1ex7A 186 24.22 c.37.1.1 59537 1pg4A 652 25.08 e.23.1.1 88067 1bbt1 213 27.00 2q0dA 353 27.31 1qs0B 338 27.55 c.36.1.7,c.48.1.2 31830,33103 2qacA 146 27.95 1giqA 413 29.30 d.166.1.1,d.166.1.1 76224,76225 1w85B 324 29.48 c.36.1.7,c.48.1.2 114336,114337 1svjA 156 29.52 d.220.1.1 106049 1t95A 240 29.65 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1qamA 244 30.01 c.66.1.24 34220 1c3jA 351 30.42 c.87.1.1 35459 1mvwB 145 31.17 i.15.1.1 79524 2yxtA 312 33.66 1sz6A 249 34.50 d.165.1.1 112171 2i7nA 360 36.31 3bixA 574 39.55 2j2fA 363 39.90 4cpvA 108 40.25 a.39.1.4 17198 3b34A 891 40.73 1f5vA 240 42.77 d.90.1.1 40255 2e7uA 424 43.97 1njgA 250 44.02 c.37.1.20 85785 1yc5A 246 44.58 c.31.1.5 122910 2pbeA 294 45.73 2i5gA 325 46.02 1rhsA 296 47.67 c.46.1.2,c.46.1.2 32703,32704 1exrA 148 49.50 a.39.1.5 17299 1xuvA 178 52.20 d.129.3.5 116069 1vr5A 547 52.33 c.94.1.1 120437 1lu4A 136 53.47 c.47.1.10 91124 1vffA 423 54.95 c.1.8.4 120033 1wxxA 382 55.12 b.122.1.9,c.66.1.51 121418,121419 2qalM 117 55.77 1mrgA 263 56.34 d.165.1.1 42183 1wl4A 397 56.74 1nq7A 244 57.79 a.123.1.1 92047 2e6fA 314 58.45 1hd2A 161 59.88 c.47.1.10 60962 2djlA 314 60.39 1v97A 1332 61.58 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 2i1sA 188 61.70 2raqA 97 62.70 2af6A 258 63.12 1g67A 225 63.20 c.1.3.1 60311 1rroA 108 63.21 a.39.1.4 17195 2vglS 142 64.01 1odzA 386 64.22 c.1.8.3 86889 1gcyA 527 64.53 b.71.1.1,c.1.8.1 27788,28775 1sesA 421 64.83 a.2.7.1,d.104.1.1 15710,40710 3b40A 417 65.62 3c85A 183 66.33 2qmqA 286 66.46 1vplA 256 67.11 c.37.1.12 113966 1rqjA 299 68.22 a.128.1.1 97744 2ccmA 191 69.14 2zogA 479 69.76 1auiB 169 70.04 a.39.1.5 17325 2ewfA 610 71.02 2hpsA 186 72.48 2fdrA 229 74.21 c.108.1.6 133319 2o8iA 165 74.47 2etxA 209 75.96 1j32A 388 76.21 c.67.1.1 77067 2fywA 267 77.91 c.135.1.1 134408 2og1A 286 77.93 1wnyA 186 78.79 1xvjA 109 80.26 2f7kA 327 81.43 4bclA 366 82.87 b.75.1.1 27968 1a8dA 452 83.88 b.29.1.6,b.42.4.2 24262,25607 1st9A 143 85.81 c.47.1.10 98987 1t56A 216 88.43 a.4.1.9,a.121.1.1 106428,106429 1gp1A 198 88.61 c.47.1.10 33059