# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1f0nA	285	13.91	c.69.1.3	34636
2ovkC	159	16.44		
1izoA	417	21.29	a.104.1.1	83851
1sxjC	340	25.07	a.80.1.1,c.37.1.20	106085,106086
1a53	247	28.18		
2pibA	216	33.49		
1svjA	156	36.06	d.220.1.1	106049
2zfdA	226	37.81		
2z69A	154	38.17		
2qacA	146	43.97		
2ccmA	191	44.11		
1rypC	244	48.95	d.153.1.4	41934
2o8iA	165	49.54		
1w7jB	151	51.69	a.39.1.5	120690
1njgA	250	51.76	c.37.1.20	85785
1giqA	413	52.25	d.166.1.1,d.166.1.1	76224,76225
1st9A	143	53.12	c.47.1.10	98987
2o5gA	148	54.00		
2fnaA	357	56.17	a.4.5.11,c.37.1.20	133809,133810
2gv5A	161	58.30		
2obhA	143	58.72		
2qalM	117	60.00		
1t95A	240	61.44	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1ggzA	148	69.36	a.39.1.5	70176
2fywA	267	78.09	c.135.1.1	134408
1p9qC	256	80.61	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
1uddA	226	81.57	a.132.1.3	107776
2bwbA	46	83.72	a.5.2.1	129329
1pv1A	299	85.97	c.69.1.34	111639
1wdcC	156	86.97	a.39.1.5	17317
1br1B	150	87.45	a.39.1.5	17309
2yxdA	183	88.11		
1q77A	138	88.99	c.26.2.4	96023
2gmyA	153	89.76	a.152.1.3	135398