# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1sxjC	340	4.954	a.80.1.1,c.37.1.20	106085,106086
1f0nA	285	8.401	c.69.1.3	34636
2pibA	216	15.43		
1w7jB	151	20.94	a.39.1.5	120690
2raqA	97	21.02		
1ep3A	311	23.05	c.1.4.1	28597
1br1B	150	27.33	a.39.1.5	17309
2o8iA	165	27.93		
1rypC	244	29.51	d.153.1.4	41934
1svjA	156	32.63	d.220.1.1	106049
2ovkC	159	35.27		
2z69A	154	35.52		
1xuvA	178	38.08	d.129.3.5	116069
1izoA	417	40.27	a.104.1.1	83851
2v8oA	444	46.87		
2gv5A	161	47.44		
2hjhA	354	54.15		
2yxtA	312	55.20		
2zbtA	297	55.40		
1gdvA	85	55.82	a.3.1.1	60458
2z61A	370	62.48		
2qacA	146	64.38		
2fnaA	357	64.90	a.4.5.11,c.37.1.20	133809,133810
1njgA	250	70.31	c.37.1.20	85785
1st9A	143	71.42	c.47.1.10	98987
1jetA	517	72.62	c.94.1.1	35718
2qeeA	437	74.10		
1a53	247	77.65		
2zfdA	226	78.36		
1f5vA	240	79.21	d.90.1.1	40255
1q77A	138	82.74	c.26.2.4	96023
1sesA	421	83.09	a.2.7.1,d.104.1.1	15710,40710
2pu9C	111	86.21		
2obhA	143	86.30		
1t95A	240	86.91	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1qxhA	167	87.65	c.47.1.10	96528
1giqA	413	87.73	d.166.1.1,d.166.1.1	76224,76225
2fywA	267	89.71	c.135.1.1	134408