# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1sxjC	340	4.045	a.80.1.1,c.37.1.20	106085,106086
1f0nA	285	12.61	c.69.1.3	34636
2z69A	154	18.87		
2raqA	97	23.40		
2pibA	216	25.69		
1w7jB	151	29.48	a.39.1.5	120690
1svjA	156	30.50	d.220.1.1	106049
2o8iA	165	33.85		
1rypC	244	35.43	d.153.1.4	41934
1br1B	150	36.33	a.39.1.5	17309
1xuvA	178	38.63	d.129.3.5	116069
1njgA	250	50.74	c.37.1.20	85785
1izoA	417	52.09	a.104.1.1	83851
1jetA	517	52.87	c.94.1.1	35718
2zbtA	297	52.88		
1gdvA	85	55.05	a.3.1.1	60458
1fntc	245	55.09		
2ovkC	159	55.71		
2qacA	146	56.76		
2fnaA	357	57.33	a.4.5.11,c.37.1.20	133809,133810
1st9A	143	65.90	c.47.1.10	98987
2yxtA	312	67.63		
1pv1A	299	74.65	c.69.1.34	111639
2v8oA	444	77.84		
2zfdA	226	84.54		
2qeeA	437	85.73		
1t95A	240	86.89	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1yc5A	246	87.25	c.31.1.5	122910
2ccmA	191	89.36