# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qacA	146	3.516		
1sxjC	340	12.90	a.80.1.1,c.37.1.20	106085,106086
2raqA	97	14.63		
3c85A	183	18.83		
1wouA	123	20.96	c.47.1.16	109471
1wdcC	156	21.97	a.39.1.5	17317
2hiyA	183	22.53		
2ax4A	198	24.78		
1jetA	517	30.55	c.94.1.1	35718
1j27A	102	30.76	d.58.50.1	90778
2z69A	154	33.28		
1pv1A	299	33.30	c.69.1.34	111639
2ifaA	208	33.38	d.90.1.1	137329
2gv5A	161	37.75		
1wb4A	297	38.21	c.69.1.2	120827
2cjaA	522	38.23		
1xiyA	182	40.76	c.47.1.10	122022
1a2xA	159	42.33	a.39.1.5	17251
2pibA	216	52.58		
1xkpB	124	58.71	d.198.1.1	122087
1p4xA	250	60.17	a.4.5.28,a.4.5.28	87784,87785
1icpA	376	61.01	c.1.4.1	62270
2obhA	143	61.08		
1njgA	250	64.49	c.37.1.20	85785
1izoA	417	69.47	a.104.1.1	83851
1br1B	150	72.62	a.39.1.5	17309
3b9pA	297	73.51		
2aucA	126	77.70		
1gc5A	467	78.16	c.72.1.3	60429
2pu9C	111	79.34		
2fexA	188	82.92	c.23.16.2	133354
1t95A	240	83.07	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1f0nA	285	83.99	c.69.1.3	34636
2j2fA	363	84.56