# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1br1B	150	3.108	a.39.1.5	17309
1ucpA	91	4.614	a.77.1.5	99186
2a1vA	144	5.500	d.198.3.1	126019
1s1eA	224	5.702	a.39.1.5	112007
3cloA	258	6.854		
1cy9A	264	8.400	e.10.1.1	43236
1wdcB	156	8.737	a.39.1.5	17302
1xppA	115	10.57	d.74.3.2	115768
1mvwB	145	10.96	i.15.1.1	79524
1pvaA	110	11.16	a.39.1.4	17207
5palA	109	13.47	a.39.1.4	17215
2bl0B	145	14.50		
2o5gA	148	15.81		
1f7cA	231	16.89	a.116.1.1	19107
1rroA	108	18.30	a.39.1.4	17195
1ggzA	148	18.94	a.39.1.5	70176
2j5bA	348	19.24		
1cuk	203	21.92		
4cpvA	108	23.23	a.39.1.4	17198
1q48A	134	23.61	d.224.1.2	95783
1xvjA	109	25.95		
1rwyA	109	26.65	a.39.1.4	98002
2pbeA	294	26.66		
2vglS	142	26.68		
2obhA	143	30.75		
1i6lA	328	31.25	c.26.1.1	66041
2h0uA	217	33.09		
1a2xA	159	38.02	a.39.1.5	17251
2bl0C	142	38.57		
1cukA	203	39.59	a.5.1.1,a.60.2.1,b.40.4.2	16273,17946,25265
3cx5D	248	42.06		
2hglA	136	42.06		
1noxA	205	42.54	d.90.1.1	40242
2hjqA	111	42.71		
2oxcA	230	43.08		
1u20A	212	43.40	d.113.1.1	119463
2f3yA	148	43.55		
2gjsA	176	44.43	c.37.1.8	135287
2pa8L	92	45.57		
3cryA	188	46.50		
2qorA	204	46.53		
2a19A	175	46.69		
1ex7A	186	46.69	c.37.1.1	59537
2zhgA	154	46.87		
2d5rA	252	47.13		
1bouA	139	48.88	a.88.1.1	18521
2zfdA	226	50.07		
2etxA	209	52.06		
1b43A	340	52.13	a.60.7.1,c.120.1.2	18092,33362
1p9qC	256	53.76	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2p51A	333	56.78		
1ql3A	99	58.82	a.3.1.1	15822
3c18A	290	60.83		
2ao9A	155	60.84	a.4.1.17	127069
1auiB	169	62.02	a.39.1.5	17325
1u7kA	131	62.83	a.73.1.1	113087
2j41A	207	64.19		
1r8sA	164	69.20	c.37.1.8	97247
2adoA	196	72.67		
2nteA	210	72.70		
2ovkC	159	73.51		
1rec	201	74.09		
2ga1A	106	74.13	a.4.1.16	134850
1nox	205	74.16		
1kk8B	139	74.25	a.39.1.5	77430
1twfK	120	74.98	d.74.3.2	112736
1t95A	240	76.44	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2erxA	172	77.65	c.37.1.8	132304
3d5lA	221	77.90		
1s6cA	183	77.94	a.39.1.5	98594
1t4oA	117	78.23	d.50.1.1	106425
1bedA	181	79.39	c.47.1.13	90330
1kl9A	182	81.89	a.60.14.1,b.40.4.5	111574,111575
2g0qA	173	83.24		
1qhlA	227	83.78	c.37.1.12	32382
3c19A	186	86.00