(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0464 XfR39, Xylella fastidiosa 9a5c, 89 residues
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIASGTVQRADGSIQNQSLHEALITRDRKQVFRI
   2 MDRKLLDLLCSPDTRQPLSLLDGKGLEALNAAIAGGTLQRADGTAQTQPLREALITRDRKQIFRV
   3 MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIASGTVQRADGSIQNQSLHEALITRDRKQVFRI
   4 MDRKLLDLLCSPDTRQPLSLLDGKGLEALNAAIAGGALQRADGAAQTQPLREALITRDRKQIFRV
   5 MDRKLLDLLCSPDTRQPLSLLDGKGLEALNRAIAAGTLQRVDGAVQDQPLREALITRDRKQIFRV
   6 MDRKLLDLLCSPDTRQPLSLLDVKGLEVLNATIAGGTLQRADGTAQTQPLREALITRDRKQIFRV
   7 MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRI
   8 MDRKLLDLLCSPDTRQPLSLLDVKGLEALNAAIAGGTLRRADGTAQTQPLREALITRDRKQIFRV
   9 MDRKLLDLLVSPDTRQPLSLLDGKGLEALNKAISAGAVNKADGNPLAQPLREALVTRDRKQVFRV
  10 MDRKLLDILCCPITKRPLQPLSTQELEALNRHIADGQARYLDDTVVDTPLDEGLITDNGSRIYRV
  11 LDKKLLDILCCPVTKQPVRLLEADALKRLNQRIEQGEVRHMDDSPVETPLREALITENDQRIYPV
  12 LDRKLLDILCCPISKIPIRPLKRDELQRINEAIANGHLRYLDNSTVEAELDEGLITDNAERVYRV
  13 VDPELLRILCCPETYQDIKVAEAAVIEKINQQIFTGALRNRRGQVIREVIEGGLVRADGRYLYPI
  14 VDPRLLELLVCPLTKEPLEYD---------------------------SAREELISRSAKLAYPI
  15 IDPKLLEVLACPQDKGPLKYLEAEQ---------------------------VLVNERLEIAYRI
  16 VDRKLLDILVCPVTKGPLEF---------------------------DPARQELISRGAKLAYPI
  17 VDRKLLEILVCPVTKGPLEFDG---------------------------ARQELISRSAKLAYPI
  18 VDPKLLEILVCPVTKGPLEFDG---------------------------RRQELISRSARLAYPI
  19 VDRKLLDILVCPITKGPLEFD---------------------------AARQELISRGARLAYPI
  20 VDPRLLEVLVCPVTRGPLEYDRA---------------------------KGELISRAAKLAYPI
  21 IDEKLLSILVCPQDRGPLLLVGDEWL----------------------------YNPRLRRAYRI
  22 VDPKLLELLACPLTKGPLAW---------------------------DPERGELISRVAKLAYPV
  23 -DPKLLEILVCPVTKGPLELDG---------------------------ARRELISRSAKLAYPI
  24 VDPKLLEILVCPLTKGPLEFDSA---------------------------KQELISRSAKLAYPI
  25 VDPKLLEILVCPLTKGTLE---------------------------YDSARQELISRSAKLAYPI
  26 LDDTLLAILVCPQDRGPLLLVD-----------------------------GCLYNPRLKRKYRI
  27 VDRKLLDILVCPITKGPLEFD---------------------------AARQELISRGAKLAYPI
  28 VDPRLLELLVCPLTKEPLEYD---------------------------AAREELISRSAKLAYPI
  29 VDPKLLEILVCPMTKGPLEYDAA---------------------------KQELISRSAKLAYPI
  30 VDPKLLEILVCPMTKGPLEYD---------------------------AARQELISRSAKLAYPI
  31 VDRKLLEILVCPVTKGPLEFD---------------------------AARQELISRGAKLAYPI
  32 VDRKLLEILVCPVTKGPLEFD---------------------------AARQELISRGAKLAYPI
  33 LDEALLAILVCPADRGPLVLVEDGDIQVLYN-------------------------PRLRRAYRI
  34 VDSKLLEILVCPVTKGVLEYN---------------------------AERQELISRSAKLAYPI
  35 VDPRLLELLVCPLTKESLEY---------------------------DAAREELISRSAKLAYPI
  36 IDPRLLEILVCPLTKTTLEYDA---------------------------SRQELISRAAKLAYPI
  37 LDEKLRAILVCPQDRGPLLLVGDEML----------------------------YNPRLRQGYRI
  38 IDPKLLELLVCPLTKGRLEY---------------------------DSARQELISRSAKLAYPI
  39 IDPKLLELLVCPLTKGRLEY---------------------------DSARQELISRSAKLAYPI
  40 IDVRLLELLVCPLTKGPLEYDA---------------------------EHGELISRKAKLAYPV
  41 VDPRLLEILVCPRTKTTLEYDA---------------------------ENQELISRAAKLAYPI
  42 MDAKLLELLVCPVTKGPLRFDRE---------------------------HQELVSRSARLAYPV
  43 IDPKMLEILVCPITFGSLTYN---------------------------AETQELISNSAKLAYPI
  44 MDNRLLEILVCPLCK---------------------------GTLQHDRANNELICHVDKLAYPI
  45 MDNRLLEILVCPLCK---------------------------GTLQHDRAHNELICHVDKLAYPI
  46 MDNRLLEILVCPLCK---------------------------GTLQHDRANNELICHVDKLAYPI


         70        80         
         |         |         
   1 EDSIPVLLPEEAIATIQIANFPDK
   2 DDGIPVLLAEEAIATAQIADFPEK
   3 EDSIPVLLPEEAIATIQIANFPDK
   4 DDGIPVLLAEEAIATAQIADFPEK
   5 DDGIPVLLAEEAINPSQIADFPEK
   6 DDGIPVLLAEEAIATTQIADFPEK
   7 EDSIPVLLPEEAIATIQIANFPDK
   8 DDGIPVLLAEEAIATTQIADFPEK
   9 DDGIPVLLAEEAIPTAQIADFP--
  10 DDGIPVMLEERSIPG---------
  11 EDGIPIMLEERAIPA---------
  12 DDGIPIMLEERAISV---------
  13 RHNIPIMLVDEAIPL---------
  14 RDGIPIMLPEEA------------
  15 DDGIPVMLVDESIA----------
  16 RDGIPIMLPEEA------------
  17 REGIPIMLPEEA------------
  18 RDGIPIMLPEEA------------
  19 RDGIPIMLPEEA------------
  20 RDGVPIMLPEEA------------
  21 EDGIPVLLVDEAVAI---------
  22 RDGIPIMLPSEA------------
  23 RDGIPIMLPEEA------------
  24 RDGIPIMLPEEA------------
  25 RDGIPIMLPEEAR-----------
  26 DDGIPVLLVDEAVP----------
  27 RDGIPIMLPEEA------------
  28 RDGIPIMLPEEA------------
  29 RDGIPIMLPEEA------------
  30 RDGIPIMLPEEA------------
  31 RDGIPIMLPEEA------------
  32 RDGIPIMLPEEA------------
  33 EDGIPVLLVDEA------------
  34 RDGIPIMLPEEA------------
  35 RDGIPIMLPEEA------------
  36 RDGIPIMLPEEA------------
  37 DDGIPVLLVDEAVAVT--------
  38 RDGIPIMLPEEA------------
  39 RDGIPIMLPEEA------------
  40 RGGIPIMLPSEA------------
  41 RDGIPIMLPEEA------------
  42 RDGIPVLLEAE-------------
  43 RNGIPVMLPDEA------------
  44 RDGIPVMLADEA------------
  45 RDGIPVMLADEA------------
  46 RDGIPVMLADEA------------