# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.000136		
2j6aA	141	0.3463		
3ovoA	56	5.568	g.68.1.1	44696
1sgpI	51	12.92	g.68.1.1	44678
2ch9A	131	13.95		
1r0rI	51	17.02	g.68.1.1	96736
2ioyA	283	17.21		
1t1jA	125	18.27	c.23.14.2	106249
1ypvA	313	21.69		
1obfO	335	22.18	c.2.1.3,d.81.1.1	86768,86769
8abp	306	28.77		
3sgbI	56	30.05	g.68.1.1	44679
1n9lA	109	38.12	d.110.3.6	85468
1qhuA	460	43.82	b.66.1.1,b.66.1.1	27530,27531
2fn9A	290	49.60		
2gbwA	454	53.96		
1e1aA	314	54.59	b.68.6.1	59155
2pkhA	148	57.62		
1gudA	288	58.85	c.93.1.1	83326
2pjhA	80	64.92		
1l4zB	136	67.51	d.15.5.1	77704
3bz6A	183	69.19		
1ynpA	317	75.52		
1cdzA	96	79.12	c.15.1.1	30925
2occJ	59	81.87	f.23.4.1	43524
1jnuA	104	84.74	d.110.3.6	71762
1k3tA	359	85.78	c.2.1.3,d.81.1.1	72022,72023
1v54J	59	87.88	f.23.4.1	100331
1v6tA	255	88.72	c.6.2.5	113550
3brsA	289	89.68