# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	9.85e-05		
2j6aA	141	0.2186		
3ovoA	56	8.179	g.68.1.1	44696
2ch9A	131	16.07		
1ypvA	313	18.69		
1sgpI	51	23.26	g.68.1.1	44678
1obfO	335	27.65	c.2.1.3,d.81.1.1	86768,86769
1t1jA	125	27.87	c.23.14.2	106249
1l4zB	136	30.07	d.15.5.1	77704
2gbwA	454	32.89		
2ioyA	283	34.04		
8abp	306	34.89		
1r0rI	51	39.26	g.68.1.1	96736
3sgbI	56	40.07	g.68.1.1	44679
1e1aA	314	44.25	b.68.6.1	59155
1qhuA	460	49.52	b.66.1.1,b.66.1.1	27530,27531
2co5A	99	55.68		
1gudA	288	68.18	c.93.1.1	83326
2ila	155	69.37		
1wbhA	214	75.65	c.1.10.1	120845
1w9yA	319	86.15	b.82.2.1	120801
2oggA	152	87.20		
1vm9A	111	87.92	b.33.1.1	108886