# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	1.93e-06		
2j6aA	141	0.02644		
3ovoA	56	2.215	g.68.1.1	44696
2gbwA	454	3.879		
1sgpI	51	4.124	g.68.1.1	44678
1r0rI	51	5.934	g.68.1.1	96736
1xw8A	252	9.263	c.6.2.5	116111
1v6tA	255	12.01	c.6.2.5	113550
1weoA	93	12.55	g.44.1.1	114561
1qhuA	460	13.98	b.66.1.1,b.66.1.1	27530,27531
1w9yA	319	14.87	b.82.2.1	120801
3b7nA	320	15.66		
2de6A	392	15.84	b.33.1.2,d.129.3.3	131415,131416
2ioyA	283	16.73		
1uliA	460	17.28	b.33.1.2,d.129.3.3	107921,107922
3sgbI	56	17.96	g.68.1.1	44679
1vm9A	111	19.20	b.33.1.1	108886
1obfO	335	21.16	c.2.1.3,d.81.1.1	86768,86769
1cdzA	96	21.96	c.15.1.1	30925
8abp	306	22.34		
2jo6A	113	22.88		
2pkhA	148	25.49		
1auk	489	27.89		
2v2fF	390	28.05		
1n9lA	109	28.90	d.110.3.6	85468
1vd4A	62	30.65	g.41.3.1	113613
1ypvA	313	30.79		
2ckfA	454	32.18		
2b1xA	470	34.03	b.33.1.2,d.129.3.3	127675,127676
2ch9A	131	34.13		
2pqxA	245	37.17		
1c4kA	730	39.33	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1jnuA	104	39.56	d.110.3.6	71762
1l4zB	136	39.92	d.15.5.1	77704
1t1jA	125	44.59	c.23.14.2	106249
1ordA	730	49.38	c.23.1.4,c.67.1.5,d.125.1.1	31274,34503,41124
3c0dA	119	49.55		
3bz6A	183	54.69		
2oggA	152	54.85		
2a0nA	265	55.41	c.1.2.1	125961
2jepA	395	57.48		
2dfaA	250	58.10	c.6.2.5	131469
3cvoA	202	62.28		
2dri	271	64.38		
1twfI	122	65.80	g.41.3.1,g.41.3.1	112733,112734
1t0fA	276	67.79	a.4.5.27,c.52.1.16	112195,112196
2fn9A	290	68.34		
2cirA	297	69.82		
2vjeB	63	73.74		
1e1aA	314	75.31	b.68.6.1	59155
1k3tA	359	75.97	c.2.1.3,d.81.1.1	72022,72023
2c3bA	172	78.36	b.62.1.1	129723
1p3dA	475	78.61	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2gnpA	266	80.26		
1e4uA	78	82.51	g.44.1.1	59231
1rmd	116	82.78		
1edhA	226	83.00	b.1.6.1,b.1.6.1	22198,22199
1un3A	123	83.79	d.5.1.1	99646
1q68B	29	83.96	j.108.1.1	95963
1gudA	288	84.12	c.93.1.1	83326
2j3xA	431	84.16		
2pjhA	80	84.21		
2c5wB	385	85.20	e.3.1.1	129958
1olmA	403	86.14	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2bmoA	447	87.02	b.33.1.2,d.129.3.3	128804,128805
1zp7A	206	88.29		
1me4A	215	89.55	d.3.1.1	79023
1tjyA	316	89.77	c.93.1.1	107062