# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.000102		
2j6aA	141	0.5484		
3ovoA	56	4.646	g.68.1.1	44696
1sgpI	51	10.02	g.68.1.1	44678
2ioyA	283	10.13		
8abp	306	12.20		
1r0rI	51	13.84	g.68.1.1	96736
2ch9A	131	13.97		
1obfO	335	17.23	c.2.1.3,d.81.1.1	86768,86769
2fn9A	290	23.61		
1p3dA	475	23.73	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
3sgbI	56	26.24	g.68.1.1	44679
1t1jA	125	28.18	c.23.14.2	106249
1ypvA	313	29.35		
1qhuA	460	32.76	b.66.1.1,b.66.1.1	27530,27531
1gudA	288	33.49	c.93.1.1	83326
1k3tA	359	40.33	c.2.1.3,d.81.1.1	72022,72023
2occJ	59	49.63	f.23.4.1	43524
1l4zB	136	52.33	d.15.5.1	77704
1v54J	59	54.49	f.23.4.1	100331
2o20A	332	59.54		
1crwG	333	61.80	c.2.1.3,d.81.1.1	30026,39941
2jepA	395	66.11		
3brsA	289	74.25		
1yliA	153	76.84	d.38.1.1	123651
1nu0A	138	77.02	c.55.3.8	92165
1h99A	224	79.02	a.142.1.1,a.142.1.1	60814,60815
2pkhA	148	79.57		
1e1aA	314	79.97	b.68.6.1	59155
3cvoA	202	83.36		
2gbwA	454	84.60		
2ila	155	84.85		
1vm9A	111	85.18	b.33.1.1	108886
3bblA	287	89.02		
1w9yA	319	89.17	b.82.2.1	120801
1cdzA	96	89.64	c.15.1.1	30925