# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	7.08e-06		
2j6aA	141	0.7193		
2jwyA	168	4.710		
1g9zA	152	21.14	d.95.2.1	60408
3ovoA	56	21.77	g.68.1.1	44696
3b7nA	320	26.45		
2h5xA	196	30.58		
1sgpI	51	35.84	g.68.1.1	44678
3sgbI	56	35.88	g.68.1.1	44679
1cukA	203	36.21	a.5.1.1,a.60.2.1,b.40.4.2	16273,17946,25265
1n9lA	109	37.79	d.110.3.6	85468
2jepA	395	44.74		
2gbwA	454	57.38		
1z7kB	62	61.43	g.68.1.1	124631
2ek5A	129	65.98		
2ila	155	67.68		
2pd8A	149	71.05		
2gnpA	266	74.07		
1jovA	270	75.86	b.30.5.7	84192
1weoA	93	80.20	g.44.1.1	114561
1yqbA	100	80.39	d.15.1.1	123876
3chvA	284	81.13		
1w3iA	293	86.45	c.1.10.1	109152
1w9yA	319	88.28	b.82.2.1	120801
1gmxA	108	89.14	c.46.1.3	65355
2pkhA	148	89.67		
1ypvA	313	89.78		
1r0rI	51	89.98	g.68.1.1	96736