# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	4.50e-05		
2j6aA	141	0.1654		
3ovoA	56	5.579	g.68.1.1	44696
1qhuA	460	11.35	b.66.1.1,b.66.1.1	27530,27531
1sgpI	51	13.08	g.68.1.1	44678
2ch9A	131	15.24		
1r0rI	51	16.74	g.68.1.1	96736
2gbwA	454	21.15		
1ypvA	313	23.75		
1obfO	335	26.09	c.2.1.3,d.81.1.1	86768,86769
1t1jA	125	34.38	c.23.14.2	106249
1l4zB	136	34.73	d.15.5.1	77704
3sgbI	56	35.59	g.68.1.1	44679
2pkhA	148	40.24		
1vm9A	111	46.22	b.33.1.1	108886
1k3tA	359	47.29	c.2.1.3,d.81.1.1	72022,72023
2jo6A	113	52.09		
1e1aA	314	54.38	b.68.6.1	59155
1pmaP	211	65.82	d.153.1.4	41863
8abp	306	66.34		
1g9zA	152	66.82	d.95.2.1	60408
2ioyA	283	67.57		
2pjhA	80	69.69		
1n9lA	109	70.29	d.110.3.6	85468
2occJ	59	75.69	f.23.4.1	43524
1ynpA	317	81.79		
2ek5A	129	81.88		
1rypI	222	83.68	d.153.1.4	41877
3c0dA	119	85.91		
1uliA	460	87.88	b.33.1.2,d.129.3.3	107921,107922
1v54J	59	87.91	f.23.4.1	100331
1wbhA	214	88.42	c.1.10.1	120845