# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hf1A 68 2.47e-06 2j6aA 141 0.1414 1ynpA 317 1.136 1vqqA 646 2.029 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1crwG 333 2.287 c.2.1.3,d.81.1.1 30026,39941 1q7fA 286 3.429 b.68.9.1 96036 1l4zB 136 4.223 d.15.5.1 77704 1gypA 358 4.311 c.2.1.3,d.81.1.1 30004,39919 1kxrA 339 4.977 d.3.1.3 73175 2hqyA 305 5.603 2fn9A 290 6.302 1u8fO 335 6.317 c.2.1.3,d.81.1.1 119626,119627 2dpmA 284 7.506 c.66.1.28 34246 1ypvA 313 9.435 2v2fF 390 10.29 1kutA 230 11.02 d.143.1.1 73017 2rh1A 500 12.60 2in1A 175 12.85 d.20.1.4 137521 2o0yA 260 13.67 2a19B 284 13.77 3ovoA 56 14.19 g.68.1.1 44696 1og6A 298 14.41 c.1.7.1 86984 2gnpA 266 15.74 1g0u1 266 16.41 1vlyA 338 17.33 b.44.2.1,d.250.1.1 108871,108872 1uliA 460 19.35 b.33.1.2,d.129.3.3 107921,107922 1k8tA 510 19.38 e.41.1.1 68316 2nooA 502 19.73 2uwxA 494 19.96 e.3.1.1 140002 1obfO 335 20.87 c.2.1.3,d.81.1.1 86768,86769 2f57A 317 22.13 1vicA 262 22.32 c.68.1.13 100756 8abp 306 22.95 3ctpA 330 23.29 1qtwA 285 24.85 c.1.15.1 29392 1mwsA 646 24.87 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 2ntkA 222 25.70 d.153.2.1 138583 1yagA 375 26.32 c.55.1.1,c.55.1.1 33449,33450 2ch9A 131 26.48 1xw8A 252 26.88 c.6.2.5 116111 2jwyA 168 26.93 2o7tA 199 27.26 1brmA 367 30.59 c.2.1.3,d.81.1.1 30030,39945 1lqaA 346 30.84 c.1.7.1 84674 1oq1A 223 31.42 b.29.1.17 93408 2jabA 136 31.74 2qecA 204 31.97 3cvoA 202 32.47 2reeA 224 33.40 1ohvA 472 34.70 c.67.1.4 93031 1s6cA 183 34.88 a.39.1.5 98594 2rfmA 192 35.53 1ii2A 524 36.47 c.91.1.1,c.109.1.1 66146,66147 1rypI 222 37.79 d.153.1.4 41877 1cc1L 498 38.39 e.18.1.1 43301 2qqzA 126 38.94 1bf5A 545 40.17 a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1g61A 228 40.60 d.126.1.1 41126 2cirA 297 41.07 1jnuA 104 41.97 d.110.3.6 71762 1atnA 373 42.25 c.55.1.1,c.55.1.1 33437,33438 2ftwA 521 43.24 b.92.1.3,c.1.9.6 134083,134084 1sgpI 51 44.49 g.68.1.1 44678 2bjkA 516 44.87 1k3tA 359 45.34 c.2.1.3,d.81.1.1 72022,72023 2bzlA 325 45.85 1q25A 432 47.28 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1np3A 338 47.38 a.100.1.2,c.2.1.6 85946,85947 1z3iX 644 47.55 c.37.1.19,c.37.1.19 124406,124407 1bxtA 234 48.62 b.40.2.2,d.15.6.1 25210,37799 2d29A 387 48.79 a.29.3.1,e.6.1.1 131157,131158 1zsxA 347 49.43 1c4kA 730 52.62 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1zkcA 197 52.72 b.62.1.1 125182 1l6nA 289 52.74 a.61.1.1,a.73.1.1 73624,73625 1anf 370 53.00 1c7iA 489 55.11 c.69.1.1 34632 1s1mA 545 55.15 c.23.16.1,c.37.1.10 105201,105202 1gadO 330 55.86 c.2.1.3,d.81.1.1 29950,39865 1a8rA 221 57.49 d.96.1.1 40587 1g0uD 241 57.76 d.153.1.4 41949 1r9dA 787 58.61 c.7.1.1 104865 2ao0A 324 60.97 1pjjA 271 61.16 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1pc3A 350 61.20 c.94.1.1 104102 1r0rI 51 61.90 g.68.1.1 96736 1t1jA 125 62.71 c.23.14.2 106249 1zlqA 502 63.85 c.94.1.1 125253 1r0mA 375 64.84 c.1.11.2,d.54.1.1 104747,104748 1jovA 270 64.97 b.30.5.7 84192 1z0sA 278 65.18 e.52.1.1 124328 1hnnA 282 65.70 c.66.1.15 65895 2e7uA 424 66.08 2vgeA 229 66.80 2ch5A 347 67.04 c.55.1.5,c.55.1.5 130453,130454 1yndA 165 67.79 b.62.1.1 123721 1qguB 519 68.93 c.92.2.3 35626 1n9eA 787 68.99 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2dqrA 122 69.09 1q1lA 401 69.25 d.258.1.1 95591 1h99A 224 69.56 a.142.1.1,a.142.1.1 60814,60815 1y08A 323 69.66 d.3.1.12 116280 1dssG 333 70.46 c.2.1.3,d.81.1.1 30022,39937 3b2tA 311 71.10 2qddA 378 72.39 2cu2A 337 72.92 2jo6A 113 74.04 3bz6A 183 74.77 1n9lA 109 75.25 d.110.3.6 85468 1tca 317 75.44 1cem 363 76.15 1ecfA 504 78.02 c.61.1.1,d.153.1.1 34053,41820 2pcqA 283 78.07 1wbhA 214 80.48 c.1.10.1 120845 2boyA 254 80.57 2c5wB 385 80.73 e.3.1.1 129958 3sgbI 56 81.49 g.68.1.1 44679 1vdnA 162 81.86 b.62.1.1 120006 1xviA 275 82.13 c.108.1.10 116088 1gg3A 279 82.30 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1up6A 416 82.36 c.2.1.5,d.162.1.2 107976,107977 2o0uA 364 84.32 d.144.1.7 138868 2an1A 292 87.69 1t4bA 367 88.03 c.2.1.3,d.81.1.1 106406,106407 2rekA 199 88.28