# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	2.68e-05		
2j6aA	141	0.3242		
3ovoA	56	4.514	g.68.1.1	44696
2ch9A	131	11.47		
1sgpI	51	11.88	g.68.1.1	44678
1r0rI	51	15.39	g.68.1.1	96736
8abp	306	15.90		
2ioyA	283	25.49		
3sgbI	56	25.62	g.68.1.1	44679
1obfO	335	29.62	c.2.1.3,d.81.1.1	86768,86769
1ypvA	313	30.79		
1t1jA	125	31.68	c.23.14.2	106249
1qhuA	460	33.64	b.66.1.1,b.66.1.1	27530,27531
1p3dA	475	45.99	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1l4zB	136	48.85	d.15.5.1	77704
1k3tA	359	50.23	c.2.1.3,d.81.1.1	72022,72023
2co5A	99	50.75		
2gbwA	454	51.92		
1w9yA	319	53.27	b.82.2.1	120801
1gudA	288	55.09	c.93.1.1	83326
2ila	155	61.35		
1e1aA	314	61.82	b.68.6.1	59155
2oggA	152	65.90		
2fn9A	290	79.91		
1cdzA	96	81.00	c.15.1.1	30925
2pkhA	148	82.88		
1crwG	333	82.96	c.2.1.3,d.81.1.1	30026,39941
2yzvA	303	83.00		
1v54J	59	83.96	f.23.4.1	100331
1wmiA	90	85.29	d.298.1.2	121045
2occJ	59	88.90	f.23.4.1	43524