# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	1.63e-05		
2j6aA	141	0.1228		
3ovoA	56	2.019	g.68.1.1	44696
1sgpI	51	5.529	g.68.1.1	44678
1r0rI	51	7.431	g.68.1.1	96736
8abp	306	11.92		
2ch9A	131	12.08		
3sgbI	56	12.30	g.68.1.1	44679
2gbwA	454	21.47		
1w9yA	319	22.78	b.82.2.1	120801
1obfO	335	24.52	c.2.1.3,d.81.1.1	86768,86769
2ioyA	283	27.06		
2pkhA	148	28.64		
1t1jA	125	32.24	c.23.14.2	106249
1p3dA	475	35.40	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2jepA	395	36.72		
1e1aA	314	46.86	b.68.6.1	59155
1ypvA	313	51.79		
1qhuA	460	51.81	b.66.1.1,b.66.1.1	27530,27531
3b7nA	320	58.09		
1weoA	93	59.98	g.44.1.1	114561
2fn9A	290	61.82		
1gudA	288	62.00	c.93.1.1	83326
1vm9A	111	64.40	b.33.1.1	108886
1cdzA	96	65.00	c.15.1.1	30925
1xw8A	252	65.82	c.6.2.5	116111
2z07A	420	66.82		
1uliA	460	67.22	b.33.1.2,d.129.3.3	107921,107922
2jo6A	113	70.61		
1nu0A	138	72.00	c.55.3.8	92165
1v54J	59	72.28	f.23.4.1	100331
2de6A	392	74.79	b.33.1.2,d.129.3.3	131415,131416
1v6tA	255	77.70	c.6.2.5	113550
1un3A	123	78.05	d.5.1.1	99646
3bjkA	153	78.19		
1k3tA	359	79.73	c.2.1.3,d.81.1.1	72022,72023
2oggA	152	80.92		
1ayx	492	83.19		
1llnA	262	83.23	d.165.1.1	84625
2occJ	59	85.78	f.23.4.1	43524
1n9lA	109	86.82	d.110.3.6	85468
2dri	271	87.42		
2co5A	99	90.00