# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	2.24e-05		
2j6aA	141	0.1228		
3ovoA	56	2.562	g.68.1.1	44696
1sgpI	51	5.232	g.68.1.1	44678
2ch9A	131	7.582		
1r0rI	51	8.653	g.68.1.1	96736
3sgbI	56	12.78	g.68.1.1	44679
8abp	306	13.18		
2ioyA	283	19.19		
1t1jA	125	25.84	c.23.14.2	106249
1w9yA	319	27.74	b.82.2.1	120801
1p3dA	475	29.32	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2gbwA	454	29.71		
1obfO	335	33.26	c.2.1.3,d.81.1.1	86768,86769
2pkhA	148	37.19		
1cdzA	96	37.58	c.15.1.1	30925
1qhuA	460	43.95	b.66.1.1,b.66.1.1	27530,27531
1ypvA	313	48.28		
1gudA	288	48.40	c.93.1.1	83326
2jepA	395	52.02		
1l4zB	136	52.93	d.15.5.1	77704
1llnA	262	54.55	d.165.1.1	84625
1vm9A	111	64.99	b.33.1.1	108886
2ila	155	65.74		
1n9lA	109	68.18	d.110.3.6	85468
1k3tA	359	68.62	c.2.1.3,d.81.1.1	72022,72023
2oggA	152	70.60		
1wbhA	214	72.68	c.1.10.1	120845
2z07A	420	81.28		
2pjhA	80	84.84		
2fn9A	290	85.18		
2c3bA	172	86.40	b.62.1.1	129723
1e1aA	314	87.25	b.68.6.1	59155